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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.44946 (51 seq.)
>W1710875560
LMOM01000022
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
7417
7504
+
Ser
TGA
[ENA]
¡û
>W1711743936
MUFV01000001
Deinococcota
Deinococcus sp. LM3 [MUFV]
878254
878167
-
Ser
TGA
[ENA]
¡û
>W1712080657
NHMK01000011
Deinococcota
Deinococcus indicus [NHMK]
53944
54031
+
Ser
TGA
[ENA]
¡û
>W131104581
APCS01000067
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
11192
11105
-
Ser
TGA
[ENA]
¡û
>W131176765
ARKH01000093
Deinococcota
Deinococcus aquatilis DSM 23025 [ARKH]
18549
18636
+
Ser
TGA
[ENA]
¡û
>W131178628
ARLS01000025
Deinococcota
Deinococcus apachensis DSM 19763 [ARLS]
6763
6676
-
Ser
TGA
[ENA]
¡û
>W131213880
ATTJ01000001
Deinococcota
Deinococcus ficus 2009 [ATTJ]
1412161
1412248
+
Ser
TGA
[ENA]
¡û
>W131237114
AUMV01000014
Deinococcota
Deinococcus ficus DSM 19119 [AUMV]
71347
71260
-
Ser
TGA
[ENA]
¡û
>C007746
CP000359
Deinococcota
Deinococcus geothermalis DSM 11300 [CP000359]
1916967
1916880
-
Ser
TGA
[Ensembl]
¡û
>C007944
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2181630
2181717
+
Ser
TGA
[Ensembl]
¡û
>WENV180232137
OBCO01000134
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
37315
37228
-
Ser
TGA
[ENA]
¢þ
>WENV180233116
OBCP01000130
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
37315
37228
-
Ser
TGA
[ENA]
¢þ
>WENV180569798
OCLR01000473
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
15961
16048
+
Ser
TGA
[ENA]
¢þ
>WENV180570747
OCLS01000473
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
15966
16053
+
Ser
TGA
[ENA]
¢þ
>WENV180571483
OCLT01000132
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
37315
37228
-
Ser
TGA
[ENA]
¢þ
>WENV180573736
OCLW01000132
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
37315
37228
-
Ser
TGA
[ENA]
¢þ
>WENV180639793
OCRL01000134
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
37315
37228
-
Ser
TGA
[ENA]
¢þ
>WENV180640725
OCRM01000132
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
37315
37228
-
Ser
TGA
[ENA]
¢þ
>W141154763
AXLL01000034
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
9574
9661
+
Ser
TGA
[ENA]
¡û
>W141169943
AXWT01000048
Deinococcota
Deinococcus murrayi DSM 11303 [AXWT]
180
267
+
Ser
TGA
[ENA]
¡û
>C181134311
CP026516
Deinococcota
Deinococcus sp. NW-56 [CP026516]
2068450
2068363
-
Ser
TGA
-
¡û
>C181185101
CP029774
Deinococcota
Deinococcus actinosclerus SJTR [CP029774]
2802899
2802812
-
Ser
TGA
-
¡û
>C181196487
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
81216
81129
-
Ser
TGA
-
¡û
>C191018454
CP021081
Deinococcota
Deinococcus ficus CC-FR2-10 [CP021081]
2563077
2562990
-
Ser
TGA
-
¡û
>W09102022
AAHE01000020
Deinococcota
Deinococcus geothermalis DSM 11300 [AAHE]
14092
14179
+
Ser
TGA
[ENA]
¡û
>W141525660
JHAC01000002
Deinococcota
Deinococcus phoenicis [JHAC]
115014
114927
-
Ser
TGA
[ENA]
¡û
>W141561466
JHYL01000006
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
37585
37498
-
Ser
TGA
[ENA]
¡û
>W141702058
JMLF01000004
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
37617
37530
-
Ser
TGA
[ENA]
¡û
>W141711948
JMQF01000033
Deinococcota
Deinococcus sp. RL [JMQF]
96966
97053
+
Ser
TGA
[ENA]
¡û
>W141821121
JQNI01000002
Deinococcota
Deinococcus sp. YIM 77859 [JQNI]
2477658
2477745
+
Ser
TGA
[ENA]
¡û
>C09103885
CP001114
Deinococcota
Deinococcus deserti VCD115 [CP001114]
388801
388888
+
Ser
TGA
[Ensembl]
¡û
>W1911597483
PNOR01000018
Deinococcota
Deinococcus planocerae XY-FW106 [PNOR]
68655
68742
+
Ser
TGA
[ENA]
¡û
>W1911788287
QYCQ01000233
Deinococcota
Deinococcus sp. RM [QYCQ]
27821
27734
-
Ser
TGA
[ENA]
¡û
>W1911802527
QYUJ01000014
Deinococcota
Deinococcus cavernae K2S05-167 [QYUJ]
493813
493726
-
Ser
TGA
[ENA]
¡û
>W1810003558
BFAG01000015
Deinococcota
Deinococcus aerius TR0125 [BFAG]
41440
41527
+
Ser
TGA
[ENA]
¡û
>W1810238316
PPPD01000001
Deinococcota
Deinococcus koreensis SJW1-2 [PPPD]
1808672
1808759
+
Ser
TGA
[ENA]
¡û
>W1810423324
PYSV01000006
Deinococcota
Deinococcus arcticus OD32 [PYSV]
193300
193213
-
Ser
TGA
[ENA]
¡û
>C151081913
CP011389
Deinococcota
Deinococcus soli [ex Cha et al. 2016] N5 [CP011389]
1300348
1300261
-
Ser
TGA
[Ensembl]
¡û
>C10105346
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2181630
2181717
+
Ser
TGA
[Ensembl]
¡û
>C11107273
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2181630
2181717
+
Ser
TGA
[Ensembl]
¡û
>C121002084
CP002191
Deinococcota
Deinococcus gobiensis I-0 [CP002191]
2573060
2572973
-
Ser
TGA
[Ensembl]
¡û
>C161034757
CP011387
Deinococcota
Deinococcus puniceus DY1 [CP011387]
2613825
2613738
-
Ser
TGA
[Ensembl]
¡û
>C161061606
CP013910
Deinococcota
Deinococcus actinosclerus BM2 [CP013910]
2752532
2752445
-
Ser
TGA
[Ensembl]
¡û
>C161082991
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
543134
543047
-
Ser
TGA
-
¡û
>W1610061568
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
594816
594903
+
Ser
TGA
[ENA]
¡û
>W1610639006
LIYN01000363
Deinococcota
Deinococcus sp. UR1 [LIYN]
201
288
+
Ser
TGA
[ENA]
¡û
>W1610737906
LMOM01000022
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
7417
7504
+
Ser
TGA
[ENA]
¡û
>W1710059233
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
594816
594903
+
Ser
TGA
[ENA]
¡û
>W1710542276
FNZA01000016
Deinococcota
Deinococcus reticulitermitis [FNZA]
23022
22935
-
Ser
TGA
[ENA]
¡û
>W1710605323
FWWU01000009
Deinococcota
Deinococcus hopiensis KR-140 [FWWU]
2533397
2533310
-
Ser
TGA
[ENA]
¡û
>W1710774900
LIYN01000363
Deinococcota
Deinococcus sp. UR1 [LIYN]
201
288
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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