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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.44963 (7 seq.)
>W131175644
ARJK01000003
Coprothermobacterota
Coprothermobacter platensis DSM 11748 [ARJK]
203117
203205
+
Leu
CAA
[ENA]
¡û
>W1711629473
MPOZ01000182
Coprothermobacterota
Coprothermobacter sp. EBM-25 [MPOZ]
1165
1077
-
Leu
CAA
[ENA]
¡û
>WENV180096534
MTBK01134963
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
2581
2493
-
Leu
CAA
[ENA]
¡û
>WENV180098705
MTBK01262700
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
54
142
+
Leu
CAA
[ENA]
¡û
>C09103425
CP001145
Coprothermobacterota
Coprothermobacter proteolyticus DSM 5265 [CP001145]
934174
934262
+
Leu
CAA
[Ensembl]
¡û
>W1810378424
PXJB01000007
Coprothermobacterota
Coprothermobacter proteolyticus SW3C [PXJB]
40415
40503
+
Leu
CAA
[ENA]
¡û
>W1810378474
PXJC01000006
Coprothermobacterota
Coprothermobacter proteolyticus BWF2A [PXJC]
40456
40544
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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