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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.44963 (90 seq.)
>W1710776320
LIZN01000002
Actinomycetota
Thermobifida halotolerans [LIZN]
232146
232059
-
Leu
GAG
[ENA]
¡û
>W1710860957
LMDH01000001
Actinomycetota
Aeromicrobium sp. Root344 [LMDH]
3361598
3361683
+
Leu
GAG
[ENA]
¡û
>W1710862997
LMET01000001
Actinomycetota
Aeromicrobium sp. Root472D3 [LMET]
2524908
2524823
-
Leu
GAG
[ENA]
¡û
>W1710867952
LMIS01000001
Actinomycetota
Aeromicrobium sp. Root236 [LMIS]
441023
441110
+
Leu
GAG
[ENA]
¡û
>W131054951
ANBC01000803
Actinomycetota
Nocardiopsis lucentensis DSM 44048 [ANBC]
20019
19932
-
Leu
GAG
[ENA]
¡û
>W131169546
AREV01000002
Actinomycetota
Actinopolymorpha alba DSM 45243 [AREV]
242293
242206
-
Leu
GAG
[ENA]
¡û
>W1711183459
LWLB01000001
Actinomycetota
Nocardiopsis sp. TSRI0078 [LWLB]
341762
341849
+
Leu
GAG
[ENA]
¡û
>W1711282520
LZNS01000001
Actinomycetota
Streptomyces sp. MP131-18 [LZNS]
879813
879900
+
Leu
GAG
[ENA]
¡û
>W1711282546
LZNS01000001
Actinomycetota
Streptomyces sp. MP131-18 [LZNS]
7100134
7100047
-
Leu
GAG
[ENA]
¡û
>W131217857
ATXE01000001
Actinomycetota
Aestuariimicrobium kwangyangense DSM 21549 [ATXE]
1434034
1433949
-
Leu
GAG
[ENA]
¡û
>W1711334222
MBQD01000027
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
33402
33487
+
Leu
GAG
[ENA]
¡û
>W1711346042
MCOK01000001
Actinomycetota
Nocardiopsis sinuspersici [MCOK]
5697425
5697338
-
Leu
GAG
[ENA]
¡û
>W1711492096
MKKC01000109
Actinomycetota
Nocardiopsis sp. CNR-923 [MKKC]
42780
42693
-
Leu
GAG
[ENA]
¡û
>W1711603535
MOMC01000104
Actinomycetota
Pseudofrankia asymbiotica NRRL B-16386 [MOMC]
21617
21530
-
Leu
GAG
[ENA]
¡û
>W1711689417
MSEA01000370
Actinomycetota
Frankia casuarinae Cg70.9 [MSEA]
5402
5487
+
Leu
GAG
[ENA]
¡û
>W1711710937
MSZZ01000094
Actinomycetota
Thermoactinospora rubra [MSZZ]
16791
16878
+
Leu
GAG
[ENA]
¡û
>C171070760
CP017965
Actinomycetota
Nocardiopsis dassonvillei NOCA502F [CP017965]
546917
546830
-
Leu
GAG
-
¡û
>C171096199
CP019605
Actinomycetota
Tessaracoccus flavus RP1 [CP019605]
1791261
1791346
+
Leu
GAG
-
¡û
>W131053487
ANAC01000011
Actinomycetota
Nocardiopsis alba DSM 43377 [ANAC]
503946
503859
-
Leu
GAG
[ENA]
¡û
>W131053574
ANAE01000079
Actinomycetota
Nocardiopsis prasina DSM 43845 [ANAE]
94766
94679
-
Leu
GAG
[ENA]
¡û
>W131054577
ANAW01000021
Actinomycetota
Nocardiopsis synnemataformans DSM 44143 [ANAW]
4405
4492
+
Leu
GAG
[ENA]
¡û
>W131054737
ANAZ01000002
Actinomycetota
Nocardiopsis valliformis DSM 45023 [ANAZ]
151046
151133
+
Leu
GAG
[ENA]
¡û
>W131054816
ANBA01000013
Actinomycetota
Nocardiopsis ganjiahuensis DSM 45031 [ANBA]
140938
140853
-
Leu
GAG
[ENA]
¡û
>W131054967
ANBD01000044
Actinomycetota
Nocardiopsis alkaliphila YIM 80379 [ANBD]
89814
89727
-
Leu
GAG
[ENA]
¡û
>W131179354
ARMI01000039
Actinomycetota
Nocardiopsis sp. CNS-639 CNS639 [ARMI]
133060
133147
+
Leu
GAG
[ENA]
¡û
>W131168053
ARDT01000033
Actinomycetota
Parafrankia discariae BCU110501 [ARDT]
1313
1228
-
Leu
GAG
[ENA]
¡û
>W131053527
ANAD01000064
Actinomycetota
Nocardiopsis halophila DSM 44494 [ANAD]
3465
3552
+
Leu
GAG
[ENA]
¡û
>W131054293
ANAS01000019
Actinomycetota
Nocardiopsis baichengensis YIM 90130 [ANAS]
16120
16033
-
Leu
GAG
[ENA]
¡û
>W131054623
ANAX01000043
Actinomycetota
Nocardiopsis halotolerans DSM 44410 [ANAX]
3216
3303
+
Leu
GAG
[ENA]
¡û
>W131054690
ANAY01000011
Actinomycetota
Nocardiopsis kunsanensis DSM 44524 [ANAY]
1605
1520
-
Leu
GAG
[ENA]
¡û
>W131054895
ANBB01000107
Actinomycetota
Nocardiopsis potens DSM 45234 [ANBB]
4129
4216
+
Leu
GAG
[ENA]
¡û
>W131055041
ANBE01000031
Actinomycetota
Nocardiopsis xinjiangensis YIM 90004 [ANBE]
97311
97398
+
Leu
GAG
[ENA]
¡û
>W131055083
ANBF01000112
Actinomycetota
Nocardiopsis salina YIM 90010 [ANBF]
9660
9747
+
Leu
GAG
[ENA]
¡û
>W131055143
ANBG01000167
Actinomycetota
Nocardiopsis gilva YIM 90087 [ANBG]
103236
103151
-
Leu
GAG
[ENA]
¡û
>W131055215
ANBH01000290
Actinomycetota
Nocardiopsis chromatogenes YIM 90109 [ANBH]
4620
4705
+
Leu
GAG
[ENA]
¡û
>WENV180356778
OBNL01023649
[OBNL] marine metagenome; ENVO:00002010
281
196
-
Leu
GAG
[ENA]
¢þ
>WENV180690169
OCZS010000189
[OCZS] soil metagenome; soil
4056
3971
-
Leu
GAG
[ENA]
¢þ
>W141091634
AUZE01000011
Actinomycetota
actinobacterium LLX17 [AUZE]
25653
25568
-
Leu
GAG
[ENA]
¡û
>WENV181166388
OEIU01000200
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
55797
55711
-
Leu
GAG
[ENA]
¢þ
>W141219655
AZXF01000005
Actinomycetota
Nocardiopsis sp. CNT312 [AZXF]
214958
215045
+
Leu
GAG
[ENA]
¡û
>W141236320
BAZE01000003
Actinomycetota
Nocardiopsis alba TP-A0876 [BAZE]
307348
307435
+
Leu
GAG
[ENA]
¡û
>WENV170011972
APMI01107079
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1032
947
-
Leu
GAG
[ENA]
¢þ
>W141403454
JDWE01000055
Actinomycetota
Frankia sp. BMG5.23 [JDWE]
22683
22598
-
Leu
GAG
[ENA]
¡û
>WENV170955730
MJUK01009591
[MJUK] soil metagenome; viral particles from soil sample TG5
278
191
-
Leu
GAG
[ENA]
¢þ
>C181064887
CP022434
Actinomycetota
Nocardiopsis dassonvillei HZNU_N_1 [CP022434]
553954
553869
-
Leu
GAG
-
¡û
>C181072212
CP022753
Actinomycetota
Nocardiopsis gilva YIM 90087 [CP022753]
5933970
5934055
+
Leu
GAG
-
¡û
>C181144022
CP026952
Actinomycetota
Aeromicrobium chenweiae 592 [CP026952]
1784769
1784858
+
Leu
GAG
-
¡û
>C191051472
CP027482
Actinomycetota
Aeromicrobium sp. A1-2 [CP027482]
1374529
1374614
+
Leu
GAG
-
¡û
>C191151534
CP036455
Actinomycetota
Streptomonospora litoralis M2 [CP036455]
5034912
5034997
+
Leu
GAG
-
¡û
>C191212908
LR134501
Actinomycetota
Nocardiopsis dassonvillei NCTC10488 [LR134501]
4667193
4667108
-
Leu
GAG
-
¡û
>W09105024
AAOL01000005
Actinomycetota
Acidothermus cellulolyticus 11B [AAOL]
55992
55907
-
Leu
GAG
[ENA]
¡û
>W09109542
ABUI01000003
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [ABUI]
304223
304310
+
Leu
GAG
[ENA]
¡û
>W09127766
ACLF01000601
Actinomycetota
Aeromicrobium marinum DSM 15272 [ACLF]
1137
1052
-
Leu
GAG
[ENA]
¡û
>W1910285481
FRFF01000169
Actinomycetota
Nocardiopsis sp. JB363 [FRFF]
13234
13149
-
Leu
GAG
[ENA]
¡û
>W1910575954
JRUV01000130
Actinomycetota
Thermobifida halotolerans DSM 44931 [JRUV]
1944
2031
+
Leu
GAG
[ENA]
¡û
>W1911709934
QPNC01000011
Actinomycetota
Nocardiopsis sp. FIRDI 009 [QPNC]
53638
53553
-
Leu
GAG
[ENA]
¡û
>W1810046861
NYMS01000048
Actinomycetota
Glycomyces fuscus TRM 49117 [NYMS]
328728
328643
-
Leu
GAG
[ENA]
¡û
>W1810570467
QEIM01000056
Actinomycetota
Marinitenerispora sediminis TPS83 [QEIM]
30919
31004
+
Leu
GAG
[ENA]
¡û
>W1810570546
QEIN01000294
Actinomycetota
Marinitenerispora sediminis TPS81 [QEIN]
10619
10704
+
Leu
GAG
[ENA]
¡û
>W1810570599
QEIO01000142
Actinomycetota
Marinitenerispora sediminis TPS16 [QEIO]
22012
21927
-
Leu
GAG
[ENA]
¡û
>W1810608317
QGTF01000007
Actinomycetota
Nocardiopsis sp. L17-MgMaSL7 [QGTF]
153346
153261
-
Leu
GAG
[ENA]
¡û
>W1810756415
QPFC01000580
Actinomycetota
Nocardiopsis sp. TNDT3 [QPFC]
3388
3473
+
Leu
GAG
[ENA]
¡û
>W1810870314
QUBR01000002
Actinomycetota
Aeromicrobium endophyticum M2KJ-4 [QUBR]
631958
631873
-
Leu
GAG
[ENA]
¡û
>W1511568520
LAJC01000023
Actinomycetota
Allosalinactinospora lopnorensis CA15-2 [LAJC]
46377
46290
-
Leu
GAG
[ENA]
¡û
>W1511573688
LAND01000006
Actinomycetota
Streptomyces sp. WMMB 714 [LAND]
385638
385553
-
Leu
GAG
[ENA]
¡û
>W1511584554
LAVM01000024
Actinomycetota
Nocardiopsis sp. SBT366 [LAVM]
60366
60453
+
Leu
GAG
[ENA]
¡û
>W1511656806
LEKI01000026
Actinomycetota
Nocardiopsis sp. RV163 [LEKI]
14524
14439
-
Leu
GAG
[ENA]
¡û
>C121001879
CP002041
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [CP002040, CP002041]
86775
86688
-
Leu
GAG
[Ensembl]
¡û
>W121010799
AGJN01000078
Actinomycetota
Pseudofrankia saprophytica CN3 [AGJN]
8059
7972
-
Leu
GAG
[ENA]
¡û
>W1610068550
BCRK01000151
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
6022
6107
+
Leu
GAG
[ENA]
¡û
>W1610068910
BCRR01000052
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
51837
51924
+
Leu
GAG
[ENA]
¡û
>W1610069236
BCSH01000088
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
24737
24824
+
Leu
GAG
[ENA]
¡û
>C131006735
CP003788
Actinomycetota
Nocardiopsis alba ATCC BAA-2165 [CP003788]
2640274
2640187
-
Leu
GAG
[Ensembl]
¡û
>W1610612145
LGEM01000001
Actinomycetota
Thermobifida cellulosilytica TB100 [LGEM]
21329
21242
-
Leu
GAG
[ENA]
¡û
>W1610632219
LIPR01000109
Actinomycetota
Streptomyces prasinus bambergiensis [LIPR]
34272
34187
-
Leu
GAG
[ENA]
¡û
>W1610634330
LIRH01000402
Actinomycetota
Streptomyces prasinus [LIRH]
3998
3913
-
Leu
GAG
[ENA]
¡û
>W1610640426
LIZN01000002
Actinomycetota
Thermobifida halotolerans [LIZN]
232146
232059
-
Leu
GAG
[ENA]
¡û
>W1610723303
LMDH01000001
Actinomycetota
Aeromicrobium sp. Root344 [LMDH]
3361598
3361683
+
Leu
GAG
[ENA]
¡û
>W1610725343
LMET01000001
Actinomycetota
Aeromicrobium sp. Root472D3 [LMET]
2524908
2524823
-
Leu
GAG
[ENA]
¡û
>W1610730298
LMIS01000001
Actinomycetota
Aeromicrobium sp. Root236 [LMIS]
441023
441110
+
Leu
GAG
[ENA]
¡û
>W1611066189
MBQD01000027
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
33402
33487
+
Leu
GAG
[ENA]
¡û
>W1710065923
BCRK01000151
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
6022
6107
+
Leu
GAG
[ENA]
¡û
>W1710066283
BCRR01000052
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
51837
51924
+
Leu
GAG
[ENA]
¡û
>W1710066609
BCSH01000088
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
24737
24824
+
Leu
GAG
[ENA]
¡û
>W1710531800
FNPU01000015
Actinomycetota
Tessaracoccus flavus [FNPU]
6073
5988
-
Leu
GAG
[ENA]
¡û
>W1710588519
FQZK01000012
Actinomycetota
Nocardiopsis flavescens [FQZK]
191107
191022
-
Leu
GAG
[ENA]
¡û
>W1710600736
FUWS01000011
Actinomycetota
Marinactinospora thermotolerans DSM 45154 [FUWS]
29241
29154
-
Leu
GAG
[ENA]
¡û
>W1710733651
LGEM01000001
Actinomycetota
Thermobifida cellulosilytica TB100 [LGEM]
21329
21242
-
Leu
GAG
[ENA]
¡û
>W1710766605
LIPR01000109
Actinomycetota
Streptomyces prasinus bambergiensis [LIPR]
34272
34187
-
Leu
GAG
[ENA]
¡û
>W1710768707
LIRH01000402
Actinomycetota
Streptomyces prasinus [LIRH]
3998
3913
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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