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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.450403 (12 seq.)
>WENV182557740
OJDK01005559
[OJDK] seawater metagenome; Sea water
154
227
+
Gln
CTG
[ENA]
¡û
>WENV182558855
OJDN01007216
[OJDN] seawater metagenome; Sea water
651
724
+
Gln
CTG
[ENA]
¡û
>WENV182561196
OJDV01013210
[OJDV] seawater metagenome; Sea water
589
662
+
Gln
CTG
[ENA]
¡û
>WENV170668206
LADL02001851
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
4931
5004
+
Gln
CTG
[ENA]
¡û
>C181068275
CP022548
Alphaproteobacteria
Sphingorhabdus sp. YGSMI21 [CP022548]
2848025
2847952
-
Gln
CTG
-
¡û
>C181220349
LT703001
Alphaproteobacteria
Sphingorhabdus sp. Alg231-15 [LT703001, LT703002]
1138033
1138106
+
Gln
CTG
-
¡û
>W2011231676
PYIA01000027
Alphaproteobacteria
Sphingopyxis sp. BSNA05 [PYIA]
30588
30661
+
Gln
CTG
[ENA]
¡û
>C211295914
CP071794
Alphaproteobacteria
Parasphingorhabdus sp. JHSY0214 [CP071794]
755200
755273
+
Gln
CTG
-
¡û
>C231232430
CP086727
Alphaproteobacteria
Parasphingorhabdus litoris DSM 22379 [CP086727]
1347523
1347450
-
Gln
CTG
-
¡û
>C241149599
CP051217
Alphaproteobacteria
Parasphingorhabdus halotolerans JK6 [CP051217]
959799
959872
+
Gln
CTG
-
¡û
>C161073960
CP014545
Alphaproteobacteria
Sphingorhabdus sp. M41 [CP014545]
1953535
1953608
+
Gln
CTG
[Ensembl]
¡û
>WENV078200
AAFZ01006991
Fossil microbial community from Whale Fall (Santa Cruz Basin)
681
608
-
Gln
CTG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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