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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.450453 (142 seq.)
>W131001473
AGYG01000017
Bacillota
Enterocloster bolteae 90B8 [AGYG]
153001
152930
-
Glu
CTC
[ENA]
¡û
>W131001474
AGYG01000017
Bacillota
Enterocloster bolteae 90B8 [AGYG]
152766
152695
-
Glu
CTC
[ENA]
¡û
>W131001493
AGYG01000028
Bacillota
Enterocloster bolteae 90B8 [AGYG]
221720
221649
-
Glu
CTC
[ENA]
¡û
>W131002000
AGYO01000002
Bacillota
Enterocloster clostridioformis 90B1 [AGYO]
55329
55258
-
Glu
CTC
[ENA]
¡û
>W131002034
AGYO01000033
Bacillota
Enterocloster clostridioformis 90B1 [AGYO]
18094
18023
-
Glu
CTC
[ENA]
¡û
>W131002212
AGYR01000020
Bacillota
Enterocloster clostridioformis 90A8 [AGYR]
342
271
-
Glu
CTC
[ENA]
¡û
>W131002233
AGYR01000047
Bacillota
Enterocloster clostridioformis 90A8 [AGYR]
51797
51726
-
Glu
CTC
[ENA]
¡û
>W131002234
AGYR01000047
Bacillota
Enterocloster clostridioformis 90A8 [AGYR]
51562
51491
-
Glu
CTC
[ENA]
¡û
>W131238466
BAHU02000033
Bacillota
Clostridiales bacterium VE202-07 [BAHU]
9837
9766
-
Glu
CTC
[ENA]
¡û
>W131238467
BAHU02000033
Bacillota
Clostridiales bacterium VE202-07 [BAHU]
9603
9532
-
Glu
CTC
[ENA]
¡û
>W131238471
BAHU02000042
Bacillota
Clostridiales bacterium VE202-07 [BAHU]
52184
52255
+
Glu
CTC
[ENA]
¡û
>WENV180125102
OASY01000764
[OASY] human gut metagenome; faeces
798
869
+
Glu
CTC
[ENA]
¢þ
>WENV180125357
OASY01003839
[OASY] human gut metagenome; faeces
1785
1856
+
Glu
CTC
[ENA]
¢þ
>WENV180126193
OASZ01000943
[OASZ] human gut metagenome; faeces
5351
5280
-
Glu
CTC
[ENA]
¢þ
>WENV180126344
OASZ01003152
[OASZ] human gut metagenome; faeces
193
122
-
Glu
CTC
[ENA]
¢þ
>WENV180133866
OATJ01005665
[OATJ] human gut metagenome; faeces
1050
979
-
Glu
CTC
[ENA]
¢þ
>WENV180137155
OATO01000515
[OATO] human gut metagenome; faeces
10618
10547
-
Glu
CTC
[ENA]
¢þ
>WENV180140267
OATT01024778
[OATT] human gut metagenome; faeces
223
294
+
Glu
CTC
[ENA]
¢þ
>WENV180146802
OAUF01012072
[OAUF] human gut metagenome; faeces
482
411
-
Glu
CTC
[ENA]
¢þ
>WENV180161995
OAVG01000020
[OAVG] human gut metagenome; faeces
205238
205167
-
Glu
CTC
[ENA]
¢þ
>WENV180167427
OAVO01050885
[OAVO] human gut metagenome; faeces
215
286
+
Glu
CTC
[ENA]
¢þ
>WENV180174041
OAWA01002801
[OAWA] human gut metagenome; faeces
5938
5867
-
Glu
CTC
[ENA]
¢þ
>WENV180182356
OAWO01011792
[OAWO] human gut metagenome; faeces
122
193
+
Glu
CTC
[ENA]
¢þ
>WENV180192688
OAXJ01050580
[OAXJ] human gut metagenome; faeces
97
168
+
Glu
CTC
[ENA]
¢þ
>WENV180195308
OAZY01012565
[OAZY] human gut metagenome; faeces
78
7
-
Glu
CTC
[ENA]
¢þ
>WENV180197527
OBAB01001451
[OBAB] human gut metagenome; faeces
9175
9104
-
Glu
CTC
[ENA]
¢þ
>WENV180197528
OBAB01001451
[OBAB] human gut metagenome; faeces
8940
8869
-
Glu
CTC
[ENA]
¢þ
>WENV180307256
OBJQ01000030
[OBJQ] human gut metagenome; human gut
74086
74015
-
Glu
CTC
[ENA]
¢þ
>WENV180307328
OBJQ01000084
[OBJQ] human gut metagenome; human gut
90874
90803
-
Glu
CTC
[ENA]
¢þ
>WENV180307329
OBJQ01000084
[OBJQ] human gut metagenome; human gut
90640
90569
-
Glu
CTC
[ENA]
¢þ
>WENV180313947
OBKF01077031
[OBKF] human gut metagenome; human gut
170
99
-
Glu
CTC
[ENA]
¢þ
>WENV180418448
OBVJ01020098
[OBVJ] human gut metagenome; faeces
104
33
-
Glu
CTC
[ENA]
¢þ
>WENV180423996
OBVW01062390
[OBVW] human gut metagenome; faeces
220
149
-
Glu
CTC
[ENA]
¢þ
>WENV180441738
OBWW01001193
[OBWW] human gut metagenome; faeces
11249
11178
-
Glu
CTC
[ENA]
¢þ
>WENV180441771
OBWW01001443
[OBWW] human gut metagenome; faeces
9388
9317
-
Glu
CTC
[ENA]
¢þ
>WENV180441772
OBWW01001443
[OBWW] human gut metagenome; faeces
9153
9082
-
Glu
CTC
[ENA]
¢þ
>WENV180445539
OBXA01007529
[OBXA] human gut metagenome; faeces
2175
2246
+
Glu
CTC
[ENA]
¢þ
>WENV180453877
OBXM01001478
[OBXM] human gut metagenome; faeces
11560
11489
-
Glu
CTC
[ENA]
¢þ
>WENV180453878
OBXM01001478
[OBXM] human gut metagenome; faeces
11325
11254
-
Glu
CTC
[ENA]
¢þ
>WENV180454368
OBXM01030912
[OBXM] human gut metagenome; faeces
212
141
-
Glu
CTC
[ENA]
¢þ
>WENV180455978
OBXQ01000033
[OBXQ] human gut metagenome; faeces
94755
94828
+
Glu
CTC
[ENA]
¢þ
>WENV180456113
OBXQ01000176
[OBXQ] human gut metagenome; faeces
45679
45750
+
Glu
CTC
[ENA]
¢þ
>WENV180459065
OBXW01006336
[OBXW] human gut metagenome; faeces
1039
968
-
Glu
CTC
[ENA]
¢þ
>WENV180459066
OBXW01006336
[OBXW] human gut metagenome; faeces
803
732
-
Glu
CTC
[ENA]
¢þ
>WENV180459708
OBXX01006592
[OBXX] human gut metagenome; faeces
946
875
-
Glu
CTC
[ENA]
¢þ
>WENV180462808
OBYB01072633
[OBYB] human gut metagenome; faeces
63
134
+
Glu
CTC
[ENA]
¢þ
>WENV180470982
OBYO01005589
[OBYO] human gut metagenome; faeces
88
159
+
Glu
CTC
[ENA]
¢þ
>WENV180476748
OBYY01018284
[OBYY] human gut metagenome; faeces
92
163
+
Glu
CTC
[ENA]
¢þ
>WENV180498910
OCAG01006043
[OCAG] human gut metagenome; faeces
170
99
-
Glu
CTC
[ENA]
¢þ
>WENV180515051
OCHB01069185
[OCHB] human gut metagenome; human gut
300
229
-
Glu
CTC
[ENA]
¢þ
>WENV180926960
ODTL01108948
[ODTL] human metagenome; G_DNA_Stool
208
279
+
Glu
CTC
[ENA]
¢þ
>WENV181343747
OFMJ01008986
[OFMJ] human gut metagenome; human gut
2984
2913
-
Glu
CTC
[ENA]
¢þ
>WENV181363986
OFOU01008458
[OFOU] human gut metagenome; human gut
215
286
+
Glu
CTC
[ENA]
¢þ
>WENV181364215
OFOU01031410
[OFOU] human gut metagenome; human gut
408
479
+
Glu
CTC
[ENA]
¢þ
>WENV181463784
OGEO01039779
[OGEO] metagenome; Human gut stool
105
176
+
Glu
CTC
[ENA]
¢þ
>WENV181560836
OGJC01012403
[OGJC] metagenome; Human gut stool
157
228
+
Glu
CTC
[ENA]
¢þ
>WENV181654954
OGOA01001760
[OGOA] metagenome; Human gut stool
7923
7850
-
Glu
CTC
[ENA]
¢þ
>WENV181834297
OGUR01000042
[OGUR] metagenome; Human gut stool
94371
94442
+
Glu
CTC
[ENA]
¢þ
>WENV181861365
OGWR01025345
[OGWR] human gut metagenome; faeces
914
843
-
Glu
CTC
[ENA]
¢þ
>WENV181953776
OGZI01027987
[OGZI] human gut metagenome; faeces
128
199
+
Glu
CTC
[ENA]
¢þ
>WENV181973492
OHAA01060229
[OHAA] human gut metagenome; faeces
267
338
+
Glu
CTC
[ENA]
¢þ
>WENV181994406
OHAS01036992
[OHAS] human gut metagenome; faeces
1129
1058
-
Glu
CTC
[ENA]
¢þ
>WENV182009722
OHBJ01036980
[OHBJ] human gut metagenome; faeces
1234
1163
-
Glu
CTC
[ENA]
¢þ
>WENV182208949
OHPY01013316
[OHPY] human gut metagenome; feces
397
468
+
Glu
CTC
[ENA]
¢þ
>WENV182402535
OIES01022703
[OIES] human gut metagenome; human gut
79
152
+
Glu
CTC
[ENA]
¢þ
>WENV182418047
OIGE01007983
[OIGE] human gut metagenome; human gut
222
293
+
Glu
CTC
[ENA]
¢þ
>WENV182448215
OILI01015294
[OILI] human gut metagenome; human gut
459
387
-
Glu
CTC
[ENA]
¢þ
>WENV182449019
OILN01004563
[OILN] human gut metagenome; human gut
136
65
-
Glu
CTC
[ENA]
¢þ
>WENV182457291
OIND01000514
[OIND] human gut metagenome; human gut
4763
4834
+
Glu
CTC
[ENA]
¢þ
>WENV182484193
OIRK01004512
[OIRK] human gut metagenome; human gut
150
221
+
Glu
CTC
[ENA]
¢þ
>WENV182505069
OIUW01006577
[OIUW] human gut metagenome; human gut
501
572
+
Glu
CTC
[ENA]
¢þ
>WENV182595841
OJIY01000044
[OJIY] metagenome; faeces
103454
103525
+
Glu
CTC
[ENA]
¢þ
>WENV182595842
OJIY01000044
[OJIY] metagenome; faeces
103674
103745
+
Glu
CTC
[ENA]
¢þ
>WENV182595927
OJIY01000099
[OJIY] metagenome; faeces
54971
55042
+
Glu
CTC
[ENA]
¢þ
>WENV182783279
OJSF01042801
[OJSF] human gut metagenome; human gut
365
436
+
Glu
CTC
[ENA]
¢þ
>WENV182789374
OJSL01015141
[OJSL] human gut metagenome; human gut
639
711
+
Glu
CTC
[ENA]
¢þ
>WENV182796786
OJSQ01088083
[OJSQ] human gut metagenome; human gut
356
428
+
Glu
CTC
[ENA]
¢þ
>WENV182806301
OJVM01000868
[OJVM] human gut metagenome; human gut
300
371
+
Glu
CTC
[ENA]
¢þ
>WENV182817062
OJZH01007877
[OJZH] human gut metagenome; human gut
583
512
-
Glu
CTC
[ENA]
¢þ
>WENV182825014
OKCG01000905
[OKCG] human gut metagenome; human gut
8975
9046
+
Glu
CTC
[ENA]
¢þ
>WENV182835276
OKFK01010324
[OKFK] human gut metagenome; human gut
212
141
-
Glu
CTC
[ENA]
¢þ
>WENV182907437
OKTE01036258
[OKTE] human gut metagenome; feces
134
63
-
Glu
CTC
[ENA]
¢þ
>WENV182973991
OKXN01011948
[OKXN] human gut metagenome; human gut
480
409
-
Glu
CTC
[ENA]
¢þ
>WENV182985538
OKZQ01006408
[OKZQ] human gut metagenome; human gut
203
274
+
Glu
CTC
[ENA]
¢þ
>WENV182986886
OKZZ01003353
[OKZZ] human gut metagenome; human gut
160
231
+
Glu
CTC
[ENA]
¢þ
>WENV182993884
OLBA01016415
[OLBA] human gut metagenome; human gut
172
100
-
Glu
CTC
[ENA]
¢þ
>WENV183014438
OLEI01027611
[OLEI] human gut metagenome; human gut
68
139
+
Glu
CTC
[ENA]
¢þ
>WENV183018897
OLFA01010267
[OLFA] human gut metagenome; human gut
550
621
+
Glu
CTC
[ENA]
¢þ
>WENV183023643
OLFS01002335
[OLFS] human gut metagenome; faeces
7327
7398
+
Glu
CTC
[ENA]
¢þ
>WENV183063081
OLIF01001460
[OLIF] metagenome; faeces
166
237
+
Glu
CTC
[ENA]
¢þ
>WENV183225106
OLQN01027737
[OLQN] human gut metagenome; faeces
425
496
+
Glu
CTC
[ENA]
¢þ
>WENV183308663
OLUG01005762
[OLUG] human gut metagenome; faeces
378
307
-
Glu
CTC
[ENA]
¢þ
>WENV183313275
OLVP01016764
[OLVP] human gut metagenome; faeces
1210
1139
-
Glu
CTC
[ENA]
¢þ
>WENV183398478
OLZO01003691
[OLZO] human gut metagenome; feces
2100
2171
+
Glu
CTC
[ENA]
¢þ
>WENV183498295
OMGO01006174
[OMGO] human gut metagenome; human gut
1345
1274
-
Glu
CTC
[ENA]
¢þ
>WENV183500308
OMGQ01006246
[OMGQ] human gut metagenome; human gut
2139
2068
-
Glu
CTC
[ENA]
¢þ
>WENV183503893
OMGU01033707
[OMGU] human gut metagenome; human gut
49
122
+
Glu
CTC
[ENA]
¢þ
>WENV183752232
PPYE01032643
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1449
1378
-
Glu
CTC
[ENA]
¢þ
>WENV183752355
PPYE01036452
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1935
2006
+
Glu
CTC
[ENA]
¢þ
>WENV183752427
PPYE01041754
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
2
73
+
Glu
CTC
[ENA]
¢þ
>WENV183753244
PPYE01052073
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
3410
3481
+
Glu
CTC
[ENA]
¢þ
>WENV183760660
PPYE01234339
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
3787
3858
+
Glu
CTC
[ENA]
¢þ
>WENV183760944
PPYE01246989
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1438
1367
-
Glu
CTC
[ENA]
¢þ
>WENV183760960
PPYE01248351
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1278
1205
-
Glu
CTC
[ENA]
¢þ
>WENV183761015
PPYE01253307
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
100
173
+
Glu
CTC
[ENA]
¢þ
>WENV183761783
PPYE01261733
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
2894
2823
-
Glu
CTC
[ENA]
¢þ
>WENV183762304
PPYE01275389
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
31339
31268
-
Glu
CTC
[ENA]
¢þ
>WENV183762511
PPYE01276249
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
7589
7518
-
Glu
CTC
[ENA]
¢þ
>WENV183768973
PPYE01412026
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
39475
39404
-
Glu
CTC
[ENA]
¢þ
>WENV183769039
PPYE01412592
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
149
78
-
Glu
CTC
[ENA]
¢þ
>WENV170051843
CDZC01000854
[CDZC] gut metagenome; human stools
11065
11136
+
Glu
CTC
[ENA]
¢þ
>WENV170051844
CDZC01000854
[CDZC] gut metagenome; human stools
11300
11371
+
Glu
CTC
[ENA]
¢þ
>WENV170052509
CDZC01020201
[CDZC] gut metagenome; human stools
10075
10004
-
Glu
CTC
[ENA]
¢þ
>WENV170636142
JFBN01051132
[JFBN] chicken gut metagenome; ceca of Broiler chicken
235
162
-
Glu
CTC
[ENA]
¢þ
>C181065750
CP022464
Bacillota
Enterocloster bolteae ATCC BAA-613 [CP022464]
4478874
4478945
+
Glu
CTC
-
¡û
>C181065751
CP022464
Bacillota
Enterocloster bolteae ATCC BAA-613 [CP022464]
4479108
4479179
+
Glu
CTC
-
¡û
>C181065780
CP022464
Bacillota
Enterocloster bolteae ATCC BAA-613 [CP022464]
3417288
3417217
-
Glu
CTC
-
¡û
>W1810403067
PYII01000004
Bacillota
Enterocloster lavalensis KCTC 15153 [PYII]
10148
10075
-
Glu
CTC
[ENA]
¡û
>W1810403069
PYII01000005
Bacillota
Enterocloster lavalensis KCTC 15153 [PYII]
27387
27316
-
Glu
CTC
[ENA]
¡û
>W1810823039
QSGP01000001
Bacillota
Enterocloster aldenensis AM40-2AC [QSGP]
1138052
1137981
-
Glu
CTC
[ENA]
¡û
>W1810823044
QSGP01000002
Bacillota
Enterocloster aldenensis AM40-2AC [QSGP]
80914
80985
+
Glu
CTC
[ENA]
¡û
>W1810835080
QSQX01000004
Bacillota
Enterocloster bolteae TF09-4AC [QSQX]
390
319
-
Glu
CTC
[ENA]
¡û
>W1810835081
QSQX01000004
Bacillota
Enterocloster bolteae TF09-4AC [QSQX]
155
84
-
Glu
CTC
[ENA]
¡û
>W1810835113
QSQX01000014
Bacillota
Enterocloster bolteae TF09-4AC [QSQX]
54794
54723
-
Glu
CTC
[ENA]
¡û
>W1810876510
QUGT01000001
Bacillota
Clostridium sp. AF18-27 [QUGT]
341336
341263
-
Glu
CTC
[ENA]
¡û
>W1810876520
QUGT01000003
Bacillota
Clostridium sp. AF18-27 [QUGT]
129367
129438
+
Glu
CTC
[ENA]
¡û
>W1810907721
QVHZ01000001
Bacillota
Hungatella hathewayi AF31-1 [QVHZ]
656375
656446
+
Glu
CTC
[ENA]
¡û
>W1810907722
QVHZ01000001
Bacillota
Hungatella hathewayi AF31-1 [QVHZ]
656609
656680
+
Glu
CTC
[ENA]
¡û
>W1810907745
QVHZ01000005
Bacillota
Hungatella hathewayi AF31-1 [QVHZ]
104186
104115
-
Glu
CTC
[ENA]
¡û
>C161086961
CP015399
Bacillota
Lachnoclostridium sp. YL32 [CP015399]
1713460
1713531
+
Glu
CTC
[Ensembl]
¡û
>C161087020
CP015399
Bacillota
Lachnoclostridium sp. YL32 [CP015399]
403343
403272
-
Glu
CTC
[Ensembl]
¡û
>W1610001905
ADLK01000019
Bacillota
Enterocloster citroniae WAL-19142 [ADLK]
102298
102369
+
Glu
CTC
[ENA]
¡û
>W1610001936
ADLK01000053
Bacillota
Enterocloster citroniae WAL-19142 [ADLK]
580
509
-
Glu
CTC
[ENA]
¡û
>W1610188231
FBWO01000172
Bacillota
Clostridium sp. C105KSO14 [FBWO]
179
250
+
Glu
CTC
[ENA]
¡û
>W1610188232
FBWO01000172
Bacillota
Clostridium sp. C105KSO14 [FBWO]
414
485
+
Glu
CTC
[ENA]
¡û
>W1610188235
FBWO01000200
Bacillota
Clostridium sp. C105KSO14 [FBWO]
3425
3354
-
Glu
CTC
[ENA]
¡û
>WENV084700
BABA01008965
Gut microbiome of Human (healthy human sample F2-Y, Child, Female)
493
419
-
Glu
CTC
[ENA]
>W1710003499
ADLK01000019
Bacillota
Enterocloster citroniae WAL-19142 [ADLK]
102298
102369
+
Glu
CTC
[ENA]
¡û
>W1710003530
ADLK01000053
Bacillota
Enterocloster citroniae WAL-19142 [ADLK]
580
509
-
Glu
CTC
[ENA]
¡û
>W1710189847
FBWO01000172
Bacillota
Clostridium sp. C105KSO14 [FBWO]
179
250
+
Glu
CTC
[ENA]
¡û
>W1710189848
FBWO01000172
Bacillota
Clostridium sp. C105KSO14 [FBWO]
414
485
+
Glu
CTC
[ENA]
¡û
>W1710189851
FBWO01000200
Bacillota
Clostridium sp. C105KSO14 [FBWO]
3425
3354
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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