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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.450566 (31 seq.)
>WENV180697727
ODDE01003398
[ODDE] human metagenome; G_DNA_Supragingival plaque
3220
3149
-
Gly
TCC
[ENA]
¡û
>WENV180734431
ODGZ01008478
[ODGZ] human metagenome; G_DNA_Supragingival plaque
2856
2927
+
Gly
TCC
[ENA]
¡û
>WENV180734822
ODGZ01026565
[ODGZ] human metagenome; G_DNA_Supragingival plaque
619
548
-
Gly
TCC
[ENA]
¡û
>WENV180801519
ODJD01046698
[ODJD] human metagenome; G_DNA_Supragingival plaque
620
549
-
Gly
TCC
[ENA]
¡û
>WENV180834484
ODKD01035895
[ODKD] human metagenome; G_DNA_Supragingival plaque
91
20
-
Gly
TCC
[ENA]
¡û
>WENV180844254
ODKN01064194
[ODKN] human metagenome; G_DNA_Supragingival plaque
607
536
-
Gly
TCC
[ENA]
¡û
>WENV180922509
ODTJ01005005
[ODTJ] human metagenome; G_DNA_Supragingival plaque
2894
2965
+
Gly
TCC
[ENA]
¡û
>WENV181019617
ODWU01007475
[ODWU] human metagenome; G_DNA_Supragingival plaque
768
839
+
Gly
TCC
[ENA]
¡û
>WENV181050436
ODYD01018911
[ODYD] human metagenome; G_DNA_Supragingival plaque
1809
1738
-
Gly
TCC
[ENA]
¡û
>WENV181070695
OEAE01006085
[OEAE] human metagenome; G_DNA_Supragingival plaque
2872
2943
+
Gly
TCC
[ENA]
¡û
>WENV181080684
OEAS01068528
[OEAS] human metagenome; G_DNA_Supragingival plaque
101
30
-
Gly
TCC
[ENA]
¡û
>WENV181146362
OEHQ01003772
[OEHQ] human metagenome; G_DNA_Supragingival plaque
5101
5172
+
Gly
TCC
[ENA]
¡û
>WENV181170169
OEIV010028709
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
459
530
+
Gly
TCC
[ENA]
¡û
>WENV170554426
CXWK01068944
[CXWK] wastewater metagenome; activated sludge
1752
1825
+
Gly
TCC
[ENA]
¡û
>WENV170702840
LKMJ01004344
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
9439
9512
+
Gly
TCC
[ENA]
¡û
>C191104253
CP033325
Actinomycetota
Georgenia faecalis ZLJ0423 [CP033325]
2469273
2469201
-
Gly
TCC
-
¡û
>C191183926
CP040899
Actinomycetota
Georgenia wutianyii Z294 [CP040899]
1022936
1022864
-
Gly
TCC
-
¡û
>W2010317479
CACRYJ010000048
Actinomycetota
Haloactinobacterium sp. F-300 [CACRYJ]
10382
10455
+
Gly
TCC
[ENA]
¡û
>W2011417167
RHDW01000001
Actinomycetota
Georgenia sp. ZLJ0321 [RHDW]
220580
220508
-
Gly
TCC
[ENA]
¡û
>W2011454398
RKRA01000001
Actinomycetota
Georgenia muralis DSM 14418 [RKRA]
2493516
2493443
-
Gly
TCC
[ENA]
¡û
>W2011499026
RXOZ01000033
Actinomycetota
Georgenia sp. SYP-B2076 [RXOZ]
149068
148995
-
Gly
TCC
[ENA]
¡û
>W2011638469
SMNA01000002
Actinomycetota
Haloactinobacterium sp. T3246_1 [SMNA]
153249
153322
+
Gly
TCC
[ENA]
¡û
>W2012152448
VUKE01000001
Actinomycetota
Georgenia ruanii JCM 15130 [VUKE]
201792
201865
+
Gly
TCC
[ENA]
¡û
>W2012378362
WMHQ01000008
Actinomycetota
Haloactinobacterium sp. HY044 [WMHQ]
139595
139522
-
Gly
TCC
[ENA]
¡û
>W2110259449
JACSPO010000001
Actinomycetota
Actinomycetaceae bacterium Sa1BUA1 [JACSPO]
2294
2221
-
Gly
TCC
[ENA]
¡û
>W2110493731
JAFFJS010000002
Actinomycetota
Flaviflexus sp. JY899 [JAFFJS]
391408
391480
+
Gly
TCC
[ENA]
¡û
>W2110569150
JAGSHT010000008
Actinomycetota
Ruania sp. N2-46 [JAGSHT]
59521
59594
+
Gly
TCC
[ENA]
¡û
>C231248802
CP088017
Actinomycetota
Ruania halotolerans M4N3S171 [CP088017]
2830370
2830297
-
Gly
TCC
-
¡û
>C231342721
CP094289
Actinomycetota
Georgenia sp. TF02-10 [CP094289]
1413586
1413513
-
Gly
TCC
-
¡û
>C241106249
CP046175
Actinomycetota
Occultella kanbiaonis HY164 [CP046175]
1813559
1813486
-
Gly
TCC
-
¡û
>W1710523234
FNHU01000007
Actinomycetota
Actinomyces ruminicola [FNHU]
155514
155443
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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