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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.450733 (28 seq.)
>WENV180038952
LLBY010015146
[LLBY] soil metagenome; soil from tomato rhizosphere
13529
13458
-
Cys
GCA
[ENA]
¡û
>WENV180040768
LLBZ010013591
[LLBZ] soil metagenome; soil from tomato rhizosphere
4155
4226
+
Cys
GCA
[ENA]
¡û
>WENV181838868
OGVN01026830
[OGVN] freshwater metagenome; freshwater
270
341
+
Cys
GCA
[ENA]
¡û
>WENV181842411
OGVT01001659
[OGVT] freshwater metagenome; freshwater
426
355
-
Cys
GCA
[ENA]
¡û
>WENV170555288
CXWK01101531
[CXWK] wastewater metagenome; activated sludge
579
652
+
Cys
GCA
[ENA]
¡û
>WENV170653843
JRYJ01144252
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
264
193
-
Cys
GCA
[ENA]
¡û
>W1810260911
PQNY01000001
Bacteroidota
Flavobacterium croceum DSM 17960 [PQNY]
110186
110257
+
Cys
GCA
[ENA]
¡û
>W2010310986
CABWML010000007
Bacteroidota
Flavobacterium sp. 9AF [CABWML]
365
294
-
Cys
GCA
[ENA]
¡û
>W2010439180
JAAATZ010000001
Bacteroidota
Flavobacterium sp. MK012 [JAAATZ]
1043500
1043429
-
Cys
GCA
[ENA]
¡û
>W2010490091
JAAJBT010000007
Bacteroidota
Flavobacterium sp. KDG-16 [JAAJBT]
126577
126506
-
Cys
GCA
[ENA]
¡û
>W2010516202
JAAMPT010000208
Bacteroidota
Flavobacterium sp. SE-s27 [JAAMPT]
176911
176840
-
Cys
GCA
[ENA]
¡û
>W2010537331
JAAQQU010000104
Bacteroidota
Flavobacterium sp. J49 [JAAQQU]
359863
359934
+
Cys
GCA
[ENA]
¡û
>W2010595923
JABEVX010000001
Bacteroidota
Flavobacterium sp. IMCC34852 [JABEVX]
569195
569124
-
Cys
GCA
[ENA]
¡û
>W2011375074
RBKX01000001
Bacteroidota
Flavobacterium sp. 102 [RBKX]
758945
759016
+
Cys
GCA
[ENA]
¡û
>W2011649627
SNXR01000012
Bacteroidota
Flavobacterium dankookense DSM 25687 [SNXR]
178955
178884
-
Cys
GCA
[ENA]
¡û
>W2110022395
BMFG01000003
Bacteroidota
Flavobacterium orientale CGMCC 1.12506 [BMFG]
220594
220665
+
Cys
GCA
[ENA]
¡û
>W2110023884
BMGK01000001
Bacteroidota
Planktosalinus lacus CGMCC 1.12924 [BMGK]
84028
84099
+
Cys
GCA
[ENA]
¡û
>W2110249077
JACRUN010000004
Bacteroidota
Flavobacterium bernardetii F-408 [JACRUN]
69138
69209
+
Cys
GCA
[ENA]
¡û
>W2110263124
JACTAB010000001
Bacteroidota
Flavobacterium buctense B7 [JACTAB]
348520
348591
+
Cys
GCA
[ENA]
¡û
>W2110263160
JACTAC010000002
Bacteroidota
Flavobacterium macrobrachii an-8 [JACTAC]
44574
44645
+
Cys
GCA
[ENA]
¡û
>W2110337739
JADMKY010000098
Bacteroidota
Flavobacterium sp. J49 [JADMKY]
359863
359934
+
Cys
GCA
[ENA]
¡û
>C231293501
CP091285
Bacteroidota
Flavobacterium jumunjinense HME7102 [CP091285]
1364129
1364200
+
Cys
GCA
-
¡û
>C231366211
CP096136
Bacteroidota
Flavobacterium sp. JAD_PAG50586_2 [CP096136]
1581252
1581181
-
Cys
GCA
-
¡û
>C231524843
CP109999
Bacteroidota
Flavobacterium sp. N1994 [CP109999]
2162491
2162562
+
Cys
GCA
-
¡û
>C231525211
CP110008
Bacteroidota
Flavobacterium sp. N2820 [CP110008]
2356217
2356288
+
Cys
GCA
-
¡û
>C231525303
CP110010
Bacteroidota
Flavobacterium sp. N501239 [CP110010]
1139038
1139109
+
Cys
GCA
-
¡û
>W1511526853
JYGZ01000005
Bacteroidota
Flavobacterium sp. 316 [JYGZ]
65097
65024
-
Cys
GCA
[ENA]
¡û
>W1710549187
FOEI01000003
Bacteroidota
Flavobacterium urocaniciphilum [FOEI]
213868
213797
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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