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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45081 (65 seq.)
>W1711462808
MJID01000019
Bacillota
Roseburia sp. 499 [MJID]
546
459
-
Ser
TGA
[ENA]
¡û
>W131176533
ARKD01000028
Bacillota
Megamonas rupellensis DSM 19944 [ARKD]
12270
12358
+
Ser
TGA
[ENA]
¡û
>W131227361
AUFC01000001
Bacillota
Anaerovorax odorimutans DSM 5092 [AUFC]
175777
175865
+
Ser
TGA
[ENA]
¡û
>WENV180540758
OCHQ01179801
[OCHQ] human gut metagenome; human gut
150
62
-
Ser
TGA
[ENA]
¡û
>WENV180578876
OCMC01004350
[OCMC] human gut metagenome; human gut
1880
1792
-
Ser
TGA
[ENA]
¡û
>WENV180613759
OCPY01000157
[OCPY] human gut metagenome; human gut
42718
42806
+
Ser
TGA
[ENA]
¡û
>WENV180649364
OCSK01036501
[OCSK] human gut metagenome; human gut
592
504
-
Ser
TGA
[ENA]
¡û
>WENV180651354
OCSZ01124724
[OCSZ] human gut metagenome; human gut
293
205
-
Ser
TGA
[ENA]
¡û
>WENV180724250
ODGR01000284
[ODGR] human metagenome; G_DNA_Tongue dorsum
210
122
-
Ser
TGA
[ENA]
¡û
>WENV180769516
ODIG01084766
[ODIG] human metagenome; G_DNA_Tongue dorsum
570
482
-
Ser
TGA
[ENA]
¡û
>WENV180816888
ODJP01093578
[ODJP] human metagenome; G_DNA_Tongue dorsum
92
180
+
Ser
TGA
[ENA]
¡û
>WENV180820575
ODJR01012996
[ODJR] human metagenome; G_DNA_Tongue dorsum
612
524
-
Ser
TGA
[ENA]
¡û
>WENV180875113
ODLQ01032759
[ODLQ] human metagenome; G_DNA_Tongue dorsum
148
236
+
Ser
TGA
[ENA]
¡û
>WENV180917770
ODTD01112274
[ODTD] human metagenome; G_DNA_Tongue dorsum
102
14
-
Ser
TGA
[ENA]
¡û
>WENV180968958
ODUT01144680
[ODUT] human metagenome; G_DNA_Tongue dorsum
171
83
-
Ser
TGA
[ENA]
¡û
>WENV180985862
ODVJ01021464
[ODVJ] human metagenome; G_DNA_Tongue dorsum
800
888
+
Ser
TGA
[ENA]
¡û
>WENV180990215
ODVN01000607
[ODVN] human metagenome; G_DNA_Tongue dorsum
29320
29408
+
Ser
TGA
[ENA]
¡û
>WENV181041725
ODXS01033905
[ODXS] human metagenome; G_DNA_Tongue dorsum
712
800
+
Ser
TGA
[ENA]
¡û
>WENV181085957
OEAY01000019
[OEAY] human metagenome; G_DNA_Tongue dorsum
168934
168846
-
Ser
TGA
[ENA]
¡û
>WENV181094391
OEBY01000128
[OEBY] human metagenome; G_DNA_Tongue dorsum
46625
46713
+
Ser
TGA
[ENA]
¡û
>WENV181097979
OECA01054044
[OECA] human metagenome; G_DNA_Tongue dorsum
171
83
-
Ser
TGA
[ENA]
¡û
>WENV181140402
OEGN01147527
[OEGN] human metagenome; G_DNA_Tongue dorsum
92
180
+
Ser
TGA
[ENA]
¡û
>WENV181221267
OFCU01000832
[OFCU] metagenome; Human gut stool
5565
5653
+
Ser
TGA
[ENA]
¡û
>WENV181236630
OFEZ01003296
[OFEZ] mouse gut metagenome; faeces
217
130
-
Ser
TGA
[ENA]
¡û
>WENV181242095
OFFF01036427
[OFFF] mouse gut metagenome; faeces
196
109
-
Ser
TGA
[ENA]
¡û
>WENV181245142
OFFI01020496
[OFFI] mouse gut metagenome; faeces
655
568
-
Ser
TGA
[ENA]
¡û
>WENV181262475
OFFY01005977
[OFFY] mouse gut metagenome; faeces
397
310
-
Ser
TGA
[ENA]
¡û
>WENV181264630
OFGA01003779
[OFGA] mouse gut metagenome; faeces
8350
8437
+
Ser
TGA
[ENA]
¡û
>WENV181269447
OFGE01001902
[OFGE] mouse gut metagenome; faeces
16433
16520
+
Ser
TGA
[ENA]
¡û
>WENV181278495
OFGM01002471
[OFGM] mouse gut metagenome; faeces
8343
8430
+
Ser
TGA
[ENA]
¡û
>WENV181288705
OFGZ01000642
[OFGZ] mouse gut metagenome; faeces
24456
24543
+
Ser
TGA
[ENA]
¡û
>WENV181424717
OGCP01012622
[OGCP] metagenome; Human gut stool
235
149
-
Ser
TGA
[ENA]
¡û
>WENV181491914
OGFY01001477
[OGFY] metagenome; Human gut stool
301
213
-
Ser
TGA
[ENA]
¡û
>WENV181505716
OGGK01083971
[OGGK] metagenome; Human gut stool
219
131
-
Ser
TGA
[ENA]
¡û
>WENV181520240
OGHD01000165
[OGHD] metagenome; Human gut stool
13409
13497
+
Ser
TGA
[ENA]
¡û
>WENV181527549
OGHK01003009
[OGHK] metagenome; Human gut stool
1046
958
-
Ser
TGA
[ENA]
¡û
>WENV181574253
OGJS01038787
[OGJS] metagenome; Human gut stool
499
411
-
Ser
TGA
[ENA]
¡û
>WENV181600741
OGLE01001182
[OGLE] metagenome; Human gut stool
2126
2214
+
Ser
TGA
[ENA]
¡û
>WENV181604374
OGLI01044758
[OGLI] metagenome; Human gut stool
210
122
-
Ser
TGA
[ENA]
¡û
>WENV181606237
OGLM01000068
[OGLM] metagenome; Human gut stool
15968
16056
+
Ser
TGA
[ENA]
¡û
>WENV181608459
OGLN01000169
[OGLN] metagenome; Human gut stool
26789
26701
-
Ser
TGA
[ENA]
¡û
>WENV181612921
OGLT01000526
[OGLT] metagenome; Human gut stool
16682
16770
+
Ser
TGA
[ENA]
¡û
>WENV181642275
OGNG01000124
[OGNG] metagenome; Human gut stool
22099
22187
+
Ser
TGA
[ENA]
¡û
>WENV181643183
OGNI01000110
[OGNI] metagenome; Human gut stool
14353
14441
+
Ser
TGA
[ENA]
¡û
>WENV181647243
OGNP01004306
[OGNP] metagenome; Human gut stool
2791
2703
-
Ser
TGA
[ENA]
¡û
>W141167355
AXUD01000001
Bacillota
[Eubacterium] brachy ATCC 33089 [AXUD]
37301
37213
-
Ser
TGA
[ENA]
¡û
>WENV181710405
OGPO01000031
[OGPO] human gut metagenome; faeces
44546
44458
-
Ser
TGA
[ENA]
¡û
>WENV181899348
OGXU01001073
[OGXU] human gut metagenome; faeces
4957
4869
-
Ser
TGA
[ENA]
¡û
>WENV181905421
OGXY01000170
[OGXY] human gut metagenome; faeces
12017
12105
+
Ser
TGA
[ENA]
¡û
>WENV181920602
OGYJ01000836
[OGYJ] human gut metagenome; faeces
27807
27719
-
Ser
TGA
[ENA]
¡û
>WENV181921550
OGYK01000004
[OGYK] human gut metagenome; faeces
99906
99818
-
Ser
TGA
[ENA]
¡û
>WENV183577790
OOCK01002718
[OOCK] human gut metagenome; human gut
5509
5597
+
Ser
TGA
[ENA]
¡û
>W1910229081
FNWE01000001
Bacillota
Ileibacterium massiliense Marseille-P3115 [FNWE]
117390
117478
+
Ser
TGA
[ENA]
¡û
>W2010140265
BLME01000362
Bacillota
Lachnospiraceae bacterium [BLME]
253
166
-
Ser
TGA
[ENA]
¡û
>W2010250039
CABIXY020000002
Bacillota
Eubacteriaceae bacterium [CABIXY]
464348
464436
+
Ser
TGA
[ENA]
¡û
>W2010275621
CABKWE020000009
Bacillota
Emergencia timonensis [CABKWE]
1956135
1956047
-
Ser
TGA
[ENA]
¡û
>W2010278536
CABMFB010000010
Bacillota
Megamonas funiformis [CABMFB]
27856
27768
-
Ser
TGA
[ENA]
¡û
>W2010383057
FNWE01000001
Bacillota
Ileibacterium massiliense Marseille-P3115 [FNWE]
117390
117478
+
Ser
TGA
[ENA]
¡û
>W2012155036
VUMT01000010
Bacillota
Lachnospiraceae bacterium WCA-693-APC-MOT-I [VUMT]
462
375
-
Ser
TGA
[ENA]
¡û
>C231186794
CP084018
Bacillota
Megamonas funiformis NBRC 114415 [CP084018]
1423996
1423908
-
Ser
TGA
-
¡û
>C241130158
CP048649
Bacillota
Aminipila butyrica DSM 103574 [CP048649]
2484549
2484461
-
Ser
TGA
-
¡û
>W2130007904
CAJFTY010000023
Bacillota
Candidatus Metaruminococcus caecorum [CAJFTY]
41620
41708
+
Ser
TGA
[ENA]
¡û
>C161103642
FP929048
Bacillota
Megamonas hypermegale ART12/1 [FP929048]
357756
357844
+
Ser
TGA
-
¡û
>W1710531811
FNPV01000001
Bacillota
Tindallia californiensis [FNPV]
453950
453862
-
Ser
TGA
[ENA]
¡û
>W1710547429
FOCY01000013
Bacillota
Megamonas sp. Calf98-2 [FOCY]
48566
48478
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK