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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45120 (92 seq.)
>W1710858256
LMBE01000008
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBE]
10366
10453
+
Ser
GGA
[ENA]
¡û
>W1710858291
LMBF01000007
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBF]
10366
10453
+
Ser
GGA
[ENA]
¡û
>W1710858335
LMBG01000024
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBG]
21282
21195
-
Ser
GGA
[ENA]
¡û
>W1710858367
LMBH01000025
Campylobacterota
Campylobacter fetus subsp. fetus [LMBH]
14197
14110
-
Ser
GGA
[ENA]
¡û
>W1710858389
LMBI01000001
Campylobacterota
Campylobacter fetus subsp. venerealis [LMBI]
10393
10480
+
Ser
GGA
[ENA]
¡û
>W1711023575
LRAL01000004
Campylobacterota
Campylobacter fetus subsp. fetus BT 10/98 [LRAL]
227624
227537
-
Ser
GGA
[ENA]
¡û
>W1711023612
LRAM01000003
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi03/596 [LRAM]
116940
116853
-
Ser
GGA
[ENA]
¡û
>W1711029014
LRER01000005
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi97/532 [LRER]
116956
116869
-
Ser
GGA
[ENA]
¡û
>W1711029038
LRES01000001
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi9825 [LRES]
10480
10567
+
Ser
GGA
[ENA]
¡û
>W1711029112
LRET01000025
Campylobacterota
Campylobacter fetus subsp. venerealis cfvB10 [LRET]
2505
2418
-
Ser
GGA
[ENA]
¡û
>W1711029137
LREX01000005
Campylobacterota
Campylobacter fetus subsp. venerealis [LREX]
113993
113906
-
Ser
GGA
[ENA]
¡û
>W1711029180
LREY01000014
Campylobacterota
Campylobacter fetus subsp. venerealis [LREY]
12461
12374
-
Ser
GGA
[ENA]
¡û
>W1711029195
LREZ01000002
Campylobacterota
Campylobacter fetus subsp. venerealis [LREZ]
228148
228061
-
Ser
GGA
[ENA]
¡û
>W1711029221
LRFA01000001
Campylobacterota
Campylobacter fetus subsp. venerealis [LRFA]
228153
228066
-
Ser
GGA
[ENA]
¡û
>W1711056052
LRVK01000043
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi02/298 [LRVK]
10483
10570
+
Ser
GGA
[ENA]
¡û
>W1711056082
LRVL01000004
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi92/203 [LRVL]
10480
10567
+
Ser
GGA
[ENA]
¡û
>W1711485988
MKEI01000006
Campylobacterota
Campylobacter fetus subsp. fetus [MKEI]
14076
13989
-
Ser
GGA
[ENA]
¡û
>C171032327
CP014568
Campylobacterota
Campylobacter fetus subsp. venerealis 01/165 [CP014568]
122808
122721
-
Ser
GGA
-
¡û
>W131196562
ASTK01000070
Campylobacterota
Campylobacter fetus subsp. venerealis bv. intermedius str. 99541 [ASTK]
6061
6147
+
Ser
GGA
[ENA]
¡û
>C005654
CP000487
Campylobacterota
Campylobacter fetus subsp. fetus 82-40 [CP000487]
122796
122709
-
Ser
GGA
[Ensembl]
¡û
>W141021505
AJMC01000001
Campylobacterota
Campylobacter fetus subsp. venerealis B6 [AJMC]
181312
181225
-
Ser
GGA
[ENA]
¡û
>W141022191
AJSG01000001
Campylobacterota
Campylobacter fetus subsp. venerealis 642-21 [AJSG]
221768
221681
-
Ser
GGA
[ENA]
¡û
>WENV183613424
OODU01004237
[OODU] human gut metagenome; human gut
1690
1603
-
Ser
GGA
[ENA]
¢þ
>C181148774
CP027287
Campylobacterota
Campylobacter fetus subsp. testudinum 772 [CP027287]
128438
128351
-
Ser
GGA
-
¡û
>C181212952
LS483431
Campylobacterota
Campylobacter fetus subsp. fetus NCTC10842 [LS483431]
122892
122805
-
Ser
GGA
-
¡û
>W09104936
AANR03000001
Campylobacterota
Campylobacter fetus subsp. fetus 82-40 [AANR]
122796
122709
-
Ser
GGA
[ENA]
¡û
>W09127789
ACLG01000742
Campylobacterota
Campylobacter fetus subsp. venerealis str. Azul-94 [ACLG]
525
438
-
Ser
GGA
[ENA]
¡û
>C141008996
CP006833
Campylobacterota
Campylobacter fetus subsp. testudinum 03-427 [CP006833]
128348
128261
-
Ser
GGA
-
¡û
>C141011439
CP006999
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi03/293 [CP006999]
122808
122721
-
Ser
GGA
[Ensembl]
¡û
>W1910574036
JPPC01000021
Campylobacterota
Campylobacter fetus subsp. venerealis TD [JPPC]
10393
10480
+
Ser
GGA
[ENA]
¡û
>W1910574073
JPQC01000020
Campylobacterota
Campylobacter fetus subsp. venerealis 66Y [JPQC]
10393
10480
+
Ser
GGA
[ENA]
¡û
>W1910640563
LSZN01000080
Campylobacterota
Campylobacter fetus subsp. fetus cff110800-21-2 [LSZN]
3385
3298
-
Ser
GGA
[ENA]
¡û
>W1910804277
MTDX01000004
Campylobacterota
Campylobacter fetus 12S01208-4 [MTDX]
234498
234411
-
Ser
GGA
[ENA]
¡û
>W1910804315
MTDY01000004
Campylobacterota
Campylobacter fetus 12S01908-5 [MTDY]
234492
234405
-
Ser
GGA
[ENA]
¡û
>W1810672804
QJTR01000020
Campylobacterota
Campylobacter fetus subsp. fetus HC1 [QJTR]
228604
228517
-
Ser
GGA
[ENA]
¡û
>W1810672840
QJTS01000014
Campylobacterota
Campylobacter fetus subsp. fetus HC2 [QJTS]
280317
280230
-
Ser
GGA
[ENA]
¡û
>C151037785
CP008808
Campylobacterota
Campylobacter fetus subsp. fetus 04/554 [CP008808]
122670
122583
-
Ser
GGA
[Ensembl]
¡û
>C151037827
CP008810
Campylobacterota
Campylobacter fetus subsp. venerealis 97/608 [CP008810]
124872
124785
-
Ser
GGA
[Ensembl]
¡û
>C151045971
CP009226
Campylobacterota
Campylobacter fetus subsp. testudinum pet-3 [CP009226]
128426
128339
-
Ser
GGA
[Ensembl]
¡û
>C151100064
HG004426
Campylobacterota
Campylobacter fetus subsp. venerealis str. 84-112 [HG004426]
124872
124785
-
Ser
GGA
[Ensembl]
¡û
>W1511349078
JRKX01000009
Campylobacterota
Campylobacter fetus MMM01 [JRKX]
10406
10493
+
Ser
GGA
[ENA]
¡û
>W11161395
AFGH01000001
Campylobacterota
Campylobacter fetus subsp. venerealis NCTC 10354 [AFGH]
180159
180072
-
Ser
GGA
[ENA]
¡û
>C161030028
CP010953
Campylobacterota
Campylobacter fetus subsp. testudinum Sp3 SP3 [CP010953]
128346
128259
-
Ser
GGA
-
¡û
>W1610550843
JYCP01000002
Campylobacterota
Campylobacter fetus subsp. fetus [JYCP]
228327
228240
-
Ser
GGA
[ENA]
¡û
>W1610596873
LELD01000009
Campylobacterota
Campylobacter fetus subsp. testudinum [LELD]
10373
10460
+
Ser
GGA
[ENA]
¡û
>W1610599372
LFLJ01000004
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLJ]
200362
200275
-
Ser
GGA
[ENA]
¡û
>W1610599425
LFLK01000006
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLK]
10371
10458
+
Ser
GGA
[ENA]
¡û
>W1610599446
LFLL01000004
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLL]
10373
10460
+
Ser
GGA
[ENA]
¡û
>W1610599515
LFLN01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLN]
157787
157700
-
Ser
GGA
[ENA]
¡û
>W1610599565
LFLO01000007
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLO]
73726
73639
-
Ser
GGA
[ENA]
¡û
>W1610599610
LFLP01000007
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLP]
10376
10463
+
Ser
GGA
[ENA]
¡û
>W1610599630
LFLQ01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLQ]
10373
10460
+
Ser
GGA
[ENA]
¡û
>W1610599782
LFMJ01000001
Campylobacterota
Campylobacter fetus subsp. testudinum [LFMJ]
287508
287421
-
Ser
GGA
[ENA]
¡û
>W1610609196
LFXC01000005
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXC]
10369
10456
+
Ser
GGA
[ENA]
¡û
>W1610609231
LFXD01000004
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXD]
160062
159975
-
Ser
GGA
[ENA]
¡û
>W1610609272
LFXE01000007
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXE]
102997
102910
-
Ser
GGA
[ENA]
¡û
>W1610609317
LFXF01000009
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXF]
10366
10453
+
Ser
GGA
[ENA]
¡û
>W1610609352
LFXG01000006
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXG]
63131
63044
-
Ser
GGA
[ENA]
¡û
>W1610720602
LMBE01000008
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBE]
10366
10453
+
Ser
GGA
[ENA]
¡û
>W1610720637
LMBF01000007
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBF]
10366
10453
+
Ser
GGA
[ENA]
¡û
>W1610720681
LMBG01000024
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBG]
21282
21195
-
Ser
GGA
[ENA]
¡û
>W1610720713
LMBH01000025
Campylobacterota
Campylobacter fetus subsp. fetus [LMBH]
14197
14110
-
Ser
GGA
[ENA]
¡û
>W1610720735
LMBI01000001
Campylobacterota
Campylobacter fetus subsp. venerealis [LMBI]
10393
10480
+
Ser
GGA
[ENA]
¡û
>W1610871687
LRAL01000004
Campylobacterota
Campylobacter fetus subsp. fetus BT 10/98 [LRAL]
227624
227537
-
Ser
GGA
[ENA]
¡û
>W1610871724
LRAM01000003
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi03/596 [LRAM]
116940
116853
-
Ser
GGA
[ENA]
¡û
>W1610877170
LRER01000005
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi97/532 [LRER]
116956
116869
-
Ser
GGA
[ENA]
¡û
>W1610877194
LRES01000001
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi9825 [LRES]
10480
10567
+
Ser
GGA
[ENA]
¡û
>W1610877268
LRET01000025
Campylobacterota
Campylobacter fetus subsp. venerealis cfvB10 [LRET]
2505
2418
-
Ser
GGA
[ENA]
¡û
>W1610877270
LREU01000001
Campylobacterota
Campylobacter fetus subsp. venerealis CCUG 33872 [LREU]
228146
228059
-
Ser
GGA
[ENA]
¡û
>W1610877320
LREV01000004
Campylobacterota
Campylobacter fetus subsp. venerealis LMG 6570 = CCUG 33900 [LREV]
151984
151897
-
Ser
GGA
[ENA]
¡û
>W1610877354
LREW01000004
Campylobacterota
Campylobacter fetus subsp. venerealis LMG 6570 = CCUG 33900 [LREW]
10394
10481
+
Ser
GGA
[ENA]
¡û
>W1610877405
LREX01000005
Campylobacterota
Campylobacter fetus subsp. venerealis [LREX]
113993
113906
-
Ser
GGA
[ENA]
¡û
>W1610877448
LREY01000014
Campylobacterota
Campylobacter fetus subsp. venerealis [LREY]
12461
12374
-
Ser
GGA
[ENA]
¡û
>W1610877463
LREZ01000002
Campylobacterota
Campylobacter fetus subsp. venerealis [LREZ]
228148
228061
-
Ser
GGA
[ENA]
¡û
>W1610877489
LRFA01000001
Campylobacterota
Campylobacter fetus subsp. venerealis [LRFA]
228153
228066
-
Ser
GGA
[ENA]
¡û
>W1610897098
LRVK01000043
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi02/298 [LRVK]
10483
10570
+
Ser
GGA
[ENA]
¡û
>W1610897128
LRVL01000004
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi92/203 [LRVL]
10480
10567
+
Ser
GGA
[ENA]
¡û
>W1710660720
JYCP01000002
Campylobacterota
Campylobacter fetus subsp. fetus [JYCP]
228327
228240
-
Ser
GGA
[ENA]
¡û
>W1710717878
LELD01000009
Campylobacterota
Campylobacter fetus subsp. testudinum [LELD]
10373
10460
+
Ser
GGA
[ENA]
¡û
>W1710720777
LFLJ01000004
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLJ]
200362
200275
-
Ser
GGA
[ENA]
¡û
>W1710720830
LFLK01000006
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLK]
10371
10458
+
Ser
GGA
[ENA]
¡û
>W1710720851
LFLL01000004
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLL]
10373
10460
+
Ser
GGA
[ENA]
¡û
>W1710720920
LFLN01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLN]
157787
157700
-
Ser
GGA
[ENA]
¡û
>W1710720970
LFLO01000007
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLO]
73726
73639
-
Ser
GGA
[ENA]
¡û
>W1710721015
LFLP01000007
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLP]
10376
10463
+
Ser
GGA
[ENA]
¡û
>W1710721035
LFLQ01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLQ]
10373
10460
+
Ser
GGA
[ENA]
¡û
>W1710721225
LFMJ01000001
Campylobacterota
Campylobacter fetus subsp. testudinum [LFMJ]
287508
287421
-
Ser
GGA
[ENA]
¡û
>W1710730483
LFXC01000005
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXC]
10369
10456
+
Ser
GGA
[ENA]
¡û
>W1710730518
LFXD01000004
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXD]
160062
159975
-
Ser
GGA
[ENA]
¡û
>W1710730559
LFXE01000007
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXE]
102997
102910
-
Ser
GGA
[ENA]
¡û
>W1710730604
LFXF01000009
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXF]
10366
10453
+
Ser
GGA
[ENA]
¡û
>W1710730639
LFXG01000006
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXG]
63131
63044
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK