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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45130 (33 seq.)
>WENV180024084
FTIF01032401
[FTIF] metagenome; soil
1472
1560
+
Ser
GGA
[ENA]
¡û
>WENV180257304
OBEQ010896904
[OBEQ] groundwater metagenome; groundwater
1170
1082
-
Ser
GGA
[ENA]
¡û
>WENV180320558
OBKO01099531
[OBKO] soil metagenome; Alaskan Permafrost
31
117
+
Ser
GGA
[ENA]
¡û
>WENV183749001
PPFU01107461
[PPFU] hypolithon metagenome; Antarctic Hypolithon
289
377
+
Ser
GGA
[ENA]
¡û
>W1911813348
QZEY01000005
Actinomycetota
Streptosporangiaceae bacterium YIM 75507 [QZEY]
303623
303709
+
Ser
GGA
[ENA]
¡û
>W1810224054
POUA01000060
Actinomycetota
Spongiactinospora gelatinilytica 7K107 [POUA]
13375
13289
-
Ser
GGA
[ENA]
¡û
>W1810701610
QMEY01000021
Actinomycetota
Spongiactinospora rosea LHW63015 [QMEY]
75183
75269
+
Ser
GGA
[ENA]
¡û
>W1810861778
QTUC01000001
Actinomycetota
Thermasporomyces composti DSM 22891 [QTUC]
2551274
2551361
+
Ser
GGA
[ENA]
¡û
>W2010132442
BLAE01000008
Actinomycetota
Acrocarpospora macrocephala NBRC 16266 [BLAE]
11235
11321
+
Ser
GGA
[ENA]
¡û
>W2010132500
BLAF01000013
Actinomycetota
Acrocarpospora pleiomorpha NBRC 16267 [BLAF]
321158
321244
+
Ser
GGA
[ENA]
¡û
>W2010701226
JACHGN010000001
Actinomycetota
Thermocatellispora tengchongensis DSM 45615 [JACHGN]
113256
113342
+
Ser
GGA
[ENA]
¡û
>W2011347618
QZEY01000005
Actinomycetota
Streptosporangiaceae bacterium YIM 75507 [QZEY]
303623
303709
+
Ser
GGA
[ENA]
¡û
>W2012021971
VFPQ01000002
Actinomycetota
Thermopolyspora flexuosa DSM 43186 [VFPQ]
254213
254127
-
Ser
GGA
[ENA]
¡û
>W2110035783
BMPV01000002
Actinomycetota
Thermopolyspora flexuosa JCM 3056 [BMPV]
188375
188461
+
Ser
GGA
[ENA]
¡û
>W2110061702
BOOG01000031
Actinomycetota
Sphaerimonospora thailandensis NBRC 107569 [BOOG]
14562
14648
+
Ser
GGA
[ENA]
¡û
>W2110301431
JADBEM010000001
Actinomycetota
Actinopolymorpha pittospori DSM 45354 [JADBEM]
3121920
3121832
-
Ser
GGA
[ENA]
¡û
>W2110458997
JAFBCM010000001
Actinomycetota
Tenggerimyces flavus DSM 28944 [JAFBCM]
236354
236267
-
Ser
GGA
[ENA]
¡û
>W2110593339
JAHCST010000022
Actinomycetota
Acrocarpospora sp. H8750 [JAHCST]
70482
70396
-
Ser
GGA
[ENA]
¡û
>C211050505
CP039124
Actinomycetota
Thermobispora bispora ZC4 [CP039124]
303461
303547
+
Ser
GGA
-
¡û
>W2130007226
CAJCIY010000267
Unclassified
Candidatus Melainabacteria bacterium [CAJCIY]
26180
26092
-
Ser
GGA
[ENA]
¡û
>W2310010048
BLRH01000060
Actinomycetota
Rhizohabitans arisaemae K14-0274 [BLRH]
1356706
1356792
+
Ser
GGA
[ENA]
¡û
>W2310027853
BSRQ01000019
Actinomycetota
Microtetraspora sp. NBRC 13810 [BSRQ]
141339
141425
+
Ser
GGA
[ENA]
¡û
>C10113092
CP001874
Actinomycetota
Thermobispora bispora DSM 43833 [CP001874]
4127351
4127437
+
Ser
GGA
[Ensembl]
¡û
>W1610050941
BBGI01000409
Actinomycetota
Sphaerimonospora mesophila NBRC 14179 = JCM 3151 [BBGI]
875
961
+
Ser
GGA
[ENA]
¡û
>W1610057666
BBYL01000013
Actinomycetota
Microtetraspora glauca [BBYL]
271871
271785
-
Ser
GGA
[ENA]
¡û
>W1610060610
BCBX01000035
Actinomycetota
Microbispora sp. GMKU363 [BCBX]
332568
332654
+
Ser
GGA
[ENA]
¡û
>W1610068447
BCRI01000195
Actinomycetota
Sphaerimonospora mesophila NBRC 14179 = JCM 3151 [BCRI]
4625
4711
+
Ser
GGA
[ENA]
¡û
>W1710047340
BBGI01000409
Actinomycetota
Sphaerimonospora mesophila NBRC 14179 = JCM 3151 [BBGI]
875
961
+
Ser
GGA
[ENA]
¡û
>W1710054365
BBYL01000013
Actinomycetota
Microtetraspora glauca [BBYL]
271871
271785
-
Ser
GGA
[ENA]
¡û
>W1710057865
BCBX01000035
Actinomycetota
Microbispora sp. GMKU363 [BCBX]
332568
332654
+
Ser
GGA
[ENA]
¡û
>W1710065820
BCRI01000195
Actinomycetota
Sphaerimonospora mesophila NBRC 14179 = JCM 3151 [BCRI]
4625
4711
+
Ser
GGA
[ENA]
¡û
>W1710516370
FNCN01000023
Actinomycetota
Sinosporangium album [FNCN]
96550
96636
+
Ser
GGA
[ENA]
¡û
>W1710526547
FNKK01000002
Actinomycetota
Thermostaphylospora chromogena [FNKK]
1547844
1547932
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK