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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.451390 (14 seq.)
>C181143185
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
986532
986462
-
Cys
GCA
-
¡û
>C191013627
CP017326
Bacillota
Weissella soli KACC 11848 [CP017326]
1452216
1452287
+
Cys
GCA
-
¡û
>W1810784507
QRAS01000003
Bacillota
Weissella soli CECT 7031 [QRAS]
26266
26195
-
Cys
GCA
[ENA]
¡û
>W2010104415
BJYO01000009
Bacillota
Weissella soli NBRC 106074 [BJYO]
439
510
+
Cys
GCA
[ENA]
¡û
>W2010581007
JAAXPL010000002
Bacillota
Weissella soli CCUG 46608 [JAAXPL]
225578
225649
+
Cys
GCA
[ENA]
¡û
>C211059799
CP043431
Bacillota
Weissella koreensis SK [CP043431]
945182
945112
-
Cys
GCA
-
¡û
>C211137944
CP060724
Bacillota
Weissella diestrammenae KACC 16890 [CP060724]
894338
894268
-
Cys
GCA
-
¡û
>C241138616
CP049888
Bacillota
Weissella coleopterorum HDW19 [CP049888]
1551756
1551826
+
Cys
GCA
-
¡û
>C241378300
CP144279
Bacillota
Weissella koreensis DMW12 [CP144279]
964517
964447
-
Cys
GCA
-
¡û
>WENV11100333
AEKF01000082
Food metagenome, Jonggazip commercial cabbage kimchi
2068
2138
+
Cys
GCA
[ENA]
¡û
>C11123769
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
922146
922073
-
Cys
GCA
[Ensembl]
¡û
>W121082011
AKGG01000004
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
94886
94816
-
Cys
GCA
[ENA]
¡û
>W1610528864
JQBP01000004
Bacillota
Weissella kandleri [JQBP]
57977
57907
-
Cys
GCA
[ENA]
¡û
>W1710630454
JQBP01000004
Bacillota
Weissella kandleri [JQBP]
57977
57907
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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