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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.451422 (36 seq.)
>W131176854
ARKJ01000019
Bacteroidota
Flavobacterium rivuli DSM 21788 [ARKJ]
135619
135546
-
Gln
TTG
[ENA]
¡û
>W131225418
AUDO01000008
Bacteroidota
Flavobacterium frigidarium DSM 17623 [AUDO]
9418
9489
+
Gln
TTG
[ENA]
¡û
>W131229187
AUGP01000017
Bacteroidota
Flavobacterium subsaxonicum DSM 21790 [AUGP]
638692
638621
-
Gln
TTG
[ENA]
¡û
>C171016701
CP012388
Bacteroidota
Flavobacterium psychrophilum Z1 [CP012388]
1775759
1775688
-
Gln
TTG
-
¡û
>WENV180391156
OBPM01022025
[OBPM] marine metagenome; ENVO:00002010
44
115
+
Gln
TTG
[ENA]
¡û
>WENV180594096
OCOY01036021
[OCOY] marine metagenome; ENVO:00002010
384
313
-
Gln
TTG
[ENA]
¡û
>WENV181170633
OEIV010068807
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
194
123
-
Gln
TTG
[ENA]
¡û
>C181047452
CP020918
Bacteroidota
Flavobacterium faecale WV33 [CP020918]
440733
440662
-
Gln
TTG
-
¡û
>W1810695885
QLSV01000006
Bacteroidota
Flavobacterium lacus CGMCC 1.12504 [QLSV]
145754
145825
+
Gln
TTG
[ENA]
¡û
>W2010613162
JABSNL010000004
Bacteroidota
Flavobacterium sp. 14A [JABSNL]
105385
105456
+
Gln
TTG
[ENA]
¡û
>W2010686939
JACFYW010000007
Bacteroidota
Flavobacterium sp. xlx-221 [JACFYW]
169470
169541
+
Gln
TTG
[ENA]
¡û
>W2010686940
JACFYW010000007
Bacteroidota
Flavobacterium sp. xlx-221 [JACFYW]
169571
169642
+
Gln
TTG
[ENA]
¡û
>W2011480230
RQTJ01000002
Bacteroidota
Flavobacterium sp. YIM 102796 [RQTJ]
141237
141308
+
Gln
TTG
[ENA]
¡û
>W2011480231
RQTJ01000002
Bacteroidota
Flavobacterium sp. YIM 102796 [RQTJ]
141338
141409
+
Gln
TTG
[ENA]
¡û
>W2011480232
RQTJ01000002
Bacteroidota
Flavobacterium sp. YIM 102796 [RQTJ]
141437
141508
+
Gln
TTG
[ENA]
¡û
>W2011531081
SBII01000001
Bacteroidota
Flavobacterium sp. 1E403 [SBII]
286383
286454
+
Gln
TTG
[ENA]
¡û
>W2011531082
SBII01000001
Bacteroidota
Flavobacterium sp. 1E403 [SBII]
286678
286749
+
Gln
TTG
[ENA]
¡û
>W2011633199
SMFK01000006
Bacteroidota
Flavobacterium sp. AR-3-4 [SMFK]
98148
98077
-
Gln
TTG
[ENA]
¡û
>W2012063493
VJVZ01000002
Bacteroidota
Flavobacterium sp. ZT4R6 [VJVZ]
231052
230981
-
Gln
TTG
[ENA]
¡û
>W2012198218
VWSG01000001
Bacteroidota
Flavobacterium sp. SNL9 [VWSG]
104901
104830
-
Gln
TTG
[ENA]
¡û
>W2012198219
VWSG01000001
Bacteroidota
Flavobacterium sp. SNL9 [VWSG]
104800
104729
-
Gln
TTG
[ENA]
¡û
>W2012198220
VWSG01000001
Bacteroidota
Flavobacterium sp. SNL9 [VWSG]
104701
104630
-
Gln
TTG
[ENA]
¡û
>W2012324924
WFKP01000007
Bacteroidota
Flavobacterium sp. xlx-214 [WFKP]
62545
62474
-
Gln
TTG
[ENA]
¡û
>W2012324925
WFKP01000007
Bacteroidota
Flavobacterium sp. xlx-214 [WFKP]
62444
62373
-
Gln
TTG
[ENA]
¡û
>W2110022390
BMFG01000002
Bacteroidota
Flavobacterium orientale CGMCC 1.12506 [BMFG]
236942
237013
+
Gln
TTG
[ENA]
¡û
>W2110248958
JACRUK010000029
Bacteroidota
Flavobacterium muglaense F-60 [JACRUK]
18073
18144
+
Gln
TTG
[ENA]
¡û
>W2110249003
JACRUL010000029
Bacteroidota
Flavobacterium muglaense F-392 [JACRUL]
18073
18144
+
Gln
TTG
[ENA]
¡û
>C201302359
CP059431
Bacteroidota
Flavobacterium sp. xlx-214 [CP059431]
1250391
1250320
-
Gln
TTG
-
¡û
>C201302360
CP059431
Bacteroidota
Flavobacterium sp. xlx-214 [CP059431]
1250290
1250219
-
Gln
TTG
-
¡û
>C231367407
CP096205
Bacteroidota
Flavobacterium azooxidireducens IGB 4-14 [CP096205]
1057386
1057315
-
Gln
TTG
-
¡û
>C161042857
CP012586
Bacteroidota
Flavobacterium psychrophilum Z2 [CP012586]
1775733
1775662
-
Gln
TTG
-
¡û
>W1610535093
JRLX01000010
Bacteroidota
Flavobacterium rivuli WB 3.3-2 = DSM 21788 [JRLX]
134950
134877
-
Gln
TTG
[ENA]
¡û
>W1610535118
JRLY01000002
Bacteroidota
Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 [JRLY]
19942
20013
+
Gln
TTG
[ENA]
¡û
>W1710541068
FNYA01000005
Bacteroidota
Flavobacterium terrigena [FNYA]
75820
75747
-
Gln
TTG
[ENA]
¡û
>W1710637329
JRLX01000010
Bacteroidota
Flavobacterium rivuli WB 3.3-2 = DSM 21788 [JRLX]
134950
134877
-
Gln
TTG
[ENA]
¡û
>W1710637354
JRLY01000002
Bacteroidota
Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 [JRLY]
19942
20013
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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