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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.451464 (82 seq.)
>W1711055078
LRUI01000001
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
84449
84376
-
Gly
TCC
[ENA]
¡û
>W1711078824
LSNE01000010
Gammaproteobacteria
Paraglaciecola hydrolytica S66 [LSNE]
336
263
-
Gly
TCC
[ENA]
¡û
>W1711947671
NBOF01000005
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
599
526
-
Gly
TCC
[ENA]
¡û
>C171034532
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
2871547
2871620
+
Gly
TCC
-
¡û
>C006825
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
5066058
5065985
-
Gly
TCC
[Ensembl]
¡û
>WENV181317331
OFJX01022092
[OFJX] marine metagenome; seawater
210
283
+
Gly
TCC
[ENA]
¡û
>WENV181319696
OFKE01009308
[OFKE] marine metagenome; seawater
233
160
-
Gly
TCC
[ENA]
¡û
>WENV181322842
OFKV01001320
[OFKV] marine metagenome; sea ice
1640
1567
-
Gly
TCC
[ENA]
¡û
>WENV181323573
OFKY01009049
[OFKY] marine metagenome; sea ice
554
481
-
Gly
TCC
[ENA]
¡û
>WENV181324289
OFLD01009911
[OFLD] marine metagenome; sea ice
612
539
-
Gly
TCC
[ENA]
¡û
>W141223860
BAEO01000045
Gammaproteobacteria
Paraglaciecola arctica BSs20135 [BAEO]
3555
3628
+
Gly
TCC
[ENA]
¡û
>W141224007
BAER01000060
Gammaproteobacteria
Paraglaciecola polaris LMG 21857 [BAER]
23007
23080
+
Gly
TCC
[ENA]
¡û
>W141224077
BAES01000085
Gammaproteobacteria
Paraglaciecola psychrophila 170 [BAES]
3183
3256
+
Gly
TCC
[ENA]
¡û
>WENV182542257
OJAX01000177
[OJAX] seawater metagenome; Sea water
286
359
+
Gly
TCC
[ENA]
¡û
>WENV182542826
OJAZ01003326
[OJAZ] seawater metagenome; Sea water
144
71
-
Gly
TCC
[ENA]
¡û
>WENV182555542
OJDB01004136
[OJDB] seawater metagenome; Sea water
294
221
-
Gly
TCC
[ENA]
¡û
>WENV182556779
OJDH01000066
[OJDH] seawater metagenome; Sea water
294
221
-
Gly
TCC
[ENA]
¡û
>WENV182568278
OJET01000024
[OJET] seawater metagenome; Sea water
76890
76963
+
Gly
TCC
[ENA]
¡û
>WENV182575503
OJFV01000006
[OJFV] seawater metagenome; Sea water
291177
291250
+
Gly
TCC
[ENA]
¡û
>WENV182577406
OJGE01001150
[OJGE] seawater metagenome; Sea water
406
333
-
Gly
TCC
[ENA]
¡û
>WENV182578814
OJGP01004645
[OJGP] seawater metagenome; Sea water
459
386
-
Gly
TCC
[ENA]
¡û
>WENV182580313
OJGV01001707
[OJGV] seawater metagenome; Sea water
529
602
+
Gly
TCC
[ENA]
¡û
>WENV182589174
OJHZ01012319
[OJHZ] seawater metagenome; Sea water
294
221
-
Gly
TCC
[ENA]
¡û
>WENV183065096
OLII01021189
[OLII] seawater metagenome; Sea water
129
202
+
Gly
TCC
[ENA]
¡û
>WENV183615887
OOEC01000758
[OOEC] marine metagenome; sea ice
3224
3297
+
Gly
TCC
[ENA]
¡û
>WENV183616801
OOEE01001473
[OOEE] marine metagenome; sea ice
3075
3148
+
Gly
TCC
[ENA]
¡û
>WENV183617467
OOEG01000515
[OOEG] marine metagenome; sea ice
3394
3467
+
Gly
TCC
[ENA]
¡û
>WENV183621257
OOFT01031841
[OOFT] marine metagenome; sea ice
235
162
-
Gly
TCC
[ENA]
¡û
>WENV183621436
OOFU01000806
[OOFU] marine metagenome; sea ice
416
343
-
Gly
TCC
[ENA]
¡û
>WENV183622661
OOFW01000885
[OOFW] marine metagenome; sea ice
3643
3716
+
Gly
TCC
[ENA]
¡û
>WENV183623362
OOFY01000412
[OOFY] marine metagenome; sea ice
383
310
-
Gly
TCC
[ENA]
¡û
>WENV183623527
OOGA01007016
[OOGA] marine metagenome; sea ice
577
504
-
Gly
TCC
[ENA]
¡û
>WENV183624334
OOGD01001318
[OOGD] marine metagenome; sea ice
3394
3467
+
Gly
TCC
[ENA]
¡û
>WENV183624668
OOGE01000343
[OOGE] marine metagenome; sea ice
1456
1383
-
Gly
TCC
[ENA]
¡û
>WENV183628256
OOGN01000835
[OOGN] marine metagenome; sea ice
668
741
+
Gly
TCC
[ENA]
¡û
>WENV183628541
OOGO01000755
[OOGO] marine metagenome; sea ice
3173
3246
+
Gly
TCC
[ENA]
¡û
>WENV170537586
CEWR01016226
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
252
325
+
Gly
TCC
[ENA]
¡û
>WENV170781248
MAAB01030316
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
524
451
-
Gly
TCC
[ENA]
¡û
>WENV170783652
MAAC01018329
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
413
340
-
Gly
TCC
[ENA]
¡û
>WENV170783966
MAAC01020176
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2390
2463
+
Gly
TCC
[ENA]
¡û
>C191128317
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
300237
300310
+
Gly
TCC
-
¡û
>W1810155384
PJAQ01000067
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
24424
24351
-
Gly
TCC
[ENA]
¡û
>W1810155594
PJAU01000059
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
357533
357606
+
Gly
TCC
[ENA]
¡û
>W1810156042
PJBA01000018
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
1089488
1089415
-
Gly
TCC
[ENA]
¡û
>W1810157924
PJCF01000003
Gammaproteobacteria
Paraglaciecola sp. MB-3u-78 [PJCF]
8866
8939
+
Gly
TCC
[ENA]
¡û
>W2010688786
JACGUR010000130
Gammaproteobacteria
Colwellia sp. MB3u-64 [JACGUR]
77002
77075
+
Gly
TCC
[ENA]
¡û
>W2010688846
JACGUS010000070
Gammaproteobacteria
Colwellia sp. MB3u-55 [JACGUS]
418
345
-
Gly
TCC
[ENA]
¡û
>W2010688948
JACGUT010000081
Gammaproteobacteria
Colwellia sp. MB3u-41 [JACGUT]
76970
77043
+
Gly
TCC
[ENA]
¡û
>W2010689023
JACGUU010000072
Gammaproteobacteria
Colwellia sp. MB3u-28 [JACGUU]
76970
77043
+
Gly
TCC
[ENA]
¡û
>W2010689073
JACGUV010000206
Gammaproteobacteria
Colwellia sp. MB3u-22 [JACGUV]
529
456
-
Gly
TCC
[ENA]
¡û
>W2010689117
JACGUW010000194
Gammaproteobacteria
Colwellia sp. MB02u-7 [JACGUW]
76969
77042
+
Gly
TCC
[ENA]
¡û
>W2010689164
JACGUX010000007
Gammaproteobacteria
Colwellia sp. MB02u-14 [JACGUX]
76948
77021
+
Gly
TCC
[ENA]
¡û
>W2010689269
JACGUY010000190
Gammaproteobacteria
Colwellia sp. MB02u-11 [JACGUY]
529
456
-
Gly
TCC
[ENA]
¡û
>W2010689312
JACGUZ010000058
Gammaproteobacteria
Colwellia sp. Bg11-12 [JACGUZ]
78126
78199
+
Gly
TCC
[ENA]
¡û
>W2010690281
JACGVM010000024
Gammaproteobacteria
Colwellia sp. BRX9-1 [JACGVM]
57516
57589
+
Gly
TCC
[ENA]
¡û
>W2010690351
JACGVN010000021
Gammaproteobacteria
Colwellia sp. BRX8-9 [JACGVN]
81102
81175
+
Gly
TCC
[ENA]
¡û
>W2010690455
JACGVP010000018
Gammaproteobacteria
Colwellia sp. BRX8-7 [JACGVP]
83964
84037
+
Gly
TCC
[ENA]
¡û
>W2010690503
JACGVQ010000024
Gammaproteobacteria
Colwellia sp. BRX8-6 [JACGVQ]
57478
57551
+
Gly
TCC
[ENA]
¡û
>W2010690577
JACGVR010000024
Gammaproteobacteria
Colwellia sp. BRX8-5 [JACGVR]
57487
57560
+
Gly
TCC
[ENA]
¡û
>W2010690676
JACGVS010000046
Gammaproteobacteria
Colwellia sp. BRX8-4 [JACGVS]
5436
5509
+
Gly
TCC
[ENA]
¡û
>W2010690720
JACGVT010000025
Gammaproteobacteria
Colwellia sp. BRX8-3 [JACGVT]
57475
57548
+
Gly
TCC
[ENA]
¡û
>W2010690769
JACGVU010000015
Gammaproteobacteria
Colwellia sp. BRX8-2 [JACGVU]
433
360
-
Gly
TCC
[ENA]
¡û
>W2010690876
JACGVV010000048
Gammaproteobacteria
Colwellia sp. BRX10-9 [JACGVV]
433
360
-
Gly
TCC
[ENA]
¡û
>W2010690954
JACGVW010000054
Gammaproteobacteria
Colwellia sp. BRX10-7 [JACGVW]
6058
6131
+
Gly
TCC
[ENA]
¡û
>W2010690998
JACGVX010000033
Gammaproteobacteria
Colwellia sp. BRX10-6 [JACGVX]
42977
43050
+
Gly
TCC
[ENA]
¡û
>W2010691086
JACGVY010000059
Gammaproteobacteria
Colwellia sp. BRX10-5 [JACGVY]
433
360
-
Gly
TCC
[ENA]
¡û
>W2010691151
JACGVZ010000057
Gammaproteobacteria
Colwellia sp. BRX10-4 [JACGVZ]
354
281
-
Gly
TCC
[ENA]
¡û
>W2010691293
JACGWB010000074
Gammaproteobacteria
Colwellia sp. BRX10-2 [JACGWB]
6106
6179
+
Gly
TCC
[ENA]
¡û
>W2010691350
JACGWC010000027
Gammaproteobacteria
Colwellia sp. BRX10-1 [JACGWC]
50771
50844
+
Gly
TCC
[ENA]
¡û
>W2010703021
JACHHU010000008
Gammaproteobacteria
Thalassotalea piscium DSM 26287 [JACHHU]
135060
135133
+
Gly
TCC
[ENA]
¡û
>W2011524321
SAIS01000047
Gammaproteobacteria
Paraglaciecola sp. D3211 [SAIS]
8506
8579
+
Gly
TCC
[ENA]
¡û
>W2012105275
VOLP01000020
Gammaproteobacteria
Colwellia hornerae IC037 [VOLP]
356
283
-
Gly
TCC
[ENA]
¡û
>W2012105357
VOLQ01000075
Gammaproteobacteria
Colwellia hornerae IC036 [VOLQ]
356
283
-
Gly
TCC
[ENA]
¡û
>W2012105413
VOLR01000021
Gammaproteobacteria
Colwellia hornerae ACAM 607 [VOLR]
356
283
-
Gly
TCC
[ENA]
¡û
>W2012105525
VOLT01000002
Gammaproteobacteria
Colwellia demingiae ACAM 459 [VOLT]
319735
319662
-
Gly
TCC
[ENA]
¡û
>W2012435558
WTPY01000056
Gammaproteobacteria
Paraglaciecola sp. 20A4 [WTPY]
7133
7206
+
Gly
TCC
[ENA]
¡û
>W2110547366
JAGHQT010000032
Gammaproteobacteria
Endozoicomonas sp. G2_1 [JAGHQT]
3468
3541
+
Gly
TCC
[ENA]
¡û
>W2110611709
JAHKPR010000048
Gammaproteobacteria
Colwellia sp. E2M01 [JAHKPR]
402
329
-
Gly
TCC
[ENA]
¡û
>C241114775
CP047024
Gammaproteobacteria
Paraglaciecola sp. L1A13 [CP047024]
4609705
4609632
-
Gly
TCC
-
¡û
>W1511322892
JQEC01000034
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
87596
87669
+
Gly
TCC
[ENA]
¡û
>C131007667
CP003837
Gammaproteobacteria
Paraglaciecola psychrophila 170 [CP003837]
4987886
4987813
-
Gly
TCC
-
¡û
>W1610917734
LSNE01000010
Gammaproteobacteria
Paraglaciecola hydrolytica S66 [LSNE]
336
263
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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