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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45149 (22 seq.)
>W1711186219
LWOA01000076
Actinomycetota
Arthrobacter sp. HMSC06H05 [LWOA]
74761
74847
+
Leu
GAG
[ENA]
¡û
>W1711312416
MASY01000035
Actinomycetota
Actinobaculum suis [MASY]
42959
43045
+
Leu
GAG
[ENA]
¡û
>W141006965
AGWQ01000006
Actinomycetota
Schaalia turicensis ACS-279-V-Col4 [AGWQ]
41433
41519
+
Leu
GAG
[ENA]
¡û
>WENV182377565
OIDF01040534
[OIDF] human gut metagenome; feces
127
41
-
Leu
GAG
[ENA]
¡û
>WENV182672061
OJNM01174582
[OJNM] metagenome; surface
433
519
+
Leu
GAG
[ENA]
¡û
>W1910341047
FTPB01000004
Actinomycetota
Actinomyces mediterranea Marseille-P3257 [FTPB]
476170
476084
-
Leu
GAG
[ENA]
¡û
>W1911596981
PNHO01000039
Actinomycetota
Pseudoglutamicibacter albus UMB0715 [PNHO]
12384
12298
-
Leu
GAG
[ENA]
¡û
>W2010397677
FTPB01000004
Actinomycetota
Actinomyces mediterranea Marseille-P3257 [FTPB]
476170
476084
-
Leu
GAG
[ENA]
¡û
>W2010722313
JACIBT010000001
Actinomycetota
Garicola koreensis DSM 28238 [JACIBT]
475300
475387
+
Leu
GAG
[ENA]
¡û
>W2011205878
PNHO01000039
Actinomycetota
Pseudoglutamicibacter albus UMB0715 [PNHO]
12384
12298
-
Leu
GAG
[ENA]
¡û
>W2011850005
UIFX01000001
Actinomycetota
Actinomyces culturomici Marseille-P3561 [UIFX]
834624
834710
+
Leu
GAG
[ENA]
¡û
>W2011954833
UYIO01000001
Actinomycetota
Bacillus pumilus NCTC10327 [UYIO]
1369012
1368926
-
Leu
GAG
[ENA]
¡û
>W2110346907
JADMZU010000001
Actinomycetota
Schaalia turicensis 1001270H_150608_E10 [JADMZU]
42088
42174
+
Leu
GAG
[ENA]
¡û
>W2110477451
JAFDPI010000016
Actinomycetota
Kocuria palustris F5_7S_P2A [JAFDPI]
39857
39943
+
Leu
GAG
[ENA]
¡û
>W2110477474
JAFDPJ010000003
Actinomycetota
Kocuria palustris F5_7S_P2B [JAFDPJ]
2254
2168
-
Leu
GAG
[ENA]
¡û
>W2110477730
JAFDPS010000021
Actinomycetota
Kocuria palustris F5_7S_P8 [JAFDPS]
2254
2168
-
Leu
GAG
[ENA]
¡û
>C211148938
CP061539
Actinomycetota
Rothia terrae KJZ-14 [CP061539]
1495359
1495445
+
Leu
GAG
-
¡û
>C211148954
CP061539
Actinomycetota
Rothia terrae KJZ-14 [CP061539]
1382529
1382443
-
Leu
GAG
-
¡û
>W1511351061
JRMX01000005
Actinomycetota
Arcanobacterium sp. S3PF19 [JRMX]
132925
132839
-
Leu
GAG
[ENA]
¡û
>W1611057469
MASY01000035
Actinomycetota
Actinobaculum suis [MASY]
42959
43045
+
Leu
GAG
[ENA]
¡û
>W1730023079
LWNR01000014
Actinomycetota
Arthrobacter sp. HMSC08H08 [LWNR]
845
759
-
Leu
GAG
[ENA]
¡û
>W1710514261
FNAU01000016
Actinomycetota
Actinobaculum suis [FNAU]
43159
43245
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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