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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.451582 (3 seq.)
>C151078202
CP011212
Unclassified
candidate division TM6 bacterium GW2011_GWF2_28_16 [CP011212]
680176
680252
+
Ile
GAT
-
¡û
>W1511599196
LBSB01000003
Unclassified
Candidatus Pacebacteria bacterium GW2011_GWF1_36_5 bacterium GW2011_GWF1_36_5 [LBSB]
22467
22543
+
Ile
GAT
[ENA]
¡û
>W1511601981
LBVQ01000001
Unclassified
Candidatus Pacebacteria bacterium GW2011_GWF2_38_9 bacterium GW2011_GWF2_38_9 [LBVQ]
674772
674848
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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