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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.451643 (4 seq.)
>WENV181415877
OGCL01031958
[OGCL] hot springs metagenome; Hot spring water
1216
1292
+
Met
CAT
[ENA]
¡û
>WENV183703461
PDVJ01015887
[PDVJ] alkali sediment metagenome; glacial lake sediment
220
296
+
Met
CAT
[ENA]
¡û
>W1810047274
OMSW01000086
Betaproteobacteria
Burkholderiales bacterium Peat soil MAG SbB2 [OMSW]
695
619
-
Met
CAT
[ENA]
¡û
>C151003110
AP014683
Betaproteobacteria
Burkholderiales bacterium GJ-E10 [AP014683]
288563
288487
-
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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