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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.451735 (133 seq.)
>W1710872268
LMLV01000032
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
1437
1510
+
Cys
GCA
[ENA]
¡û
>W1710879661
LMRV01000028
Bacillota
Paenibacillus sp. Soil522 [LMRV]
119120
119047
-
Cys
GCA
[ENA]
¡û
>W131176599
ARKE01000023
Bacillota
Paenibacillus daejeonensis DSM 15491 [ARKE]
1701
1774
+
Cys
GCA
[ENA]
¡û
>W1711309574
MAQX01000002
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
198268
198195
-
Cys
GCA
[ENA]
¡û
>W131235762
AULV01000006
Bacillota
Paenibacillus harenae DSM 16969 [AULV]
486402
486329
-
Cys
GCA
[ENA]
¡û
>W1711676959
MRTD01000074
Bacillota
Paenibacillus sp. FSL A5-0031 [MRTD]
263
190
-
Cys
GCA
[ENA]
¡û
>W1711677154
MRTH01000047
Bacillota
Paenibacillus sp. FSL H7-0331 [MRTH]
57219
57146
-
Cys
GCA
[ENA]
¡û
>W1711827001
MXQD01000038
Bacillota
Paenibacillus sp. MY03 [MXQD]
462
535
+
Cys
GCA
[ENA]
¡û
>W1712035708
NFHA01000001
Bacillota
Flavonifractor sp. An91 [NFHA]
66005
65932
-
Cys
GCA
[ENA]
¡û
>W1712036043
NFHG01000001
Bacillota
Flavonifractor sp. An82 [NFHG]
140848
140775
-
Cys
GCA
[ENA]
¡û
>W1712037233
NFIB01000028
Bacillota
Flavonifractor sp. An52 [NFIB]
23488
23415
-
Cys
GCA
[ENA]
¡û
>W1712042536
NFLU01000007
Bacillota
Flavonifractor sp. An112 [NFLU]
19759
19832
+
Cys
GCA
[ENA]
¡û
>W1712042919
NFMB01000005
Bacillota
Flavonifractor sp. An10 [NFMB]
197257
197184
-
Cys
GCA
[ENA]
¡û
>WENV180028226
FTJA01007450
[FTJA] metagenome; soil
74
1
-
Cys
GCA
[ENA]
¡û
>WENV180711041
ODFM01037430
[ODFM] human metagenome; G_DNA_Stool
193
120
-
Cys
GCA
[ENA]
¡û
>WENV181204495
OERZ01000731
[OERZ] metagenome; Caecal content
1705
1778
+
Cys
GCA
[ENA]
¡û
>WENV181240341
OFFE01000857
[OFFE] mouse gut metagenome; faeces
128
201
+
Cys
GCA
[ENA]
¡û
>WENV181242966
OFFG01008298
[OFFG] mouse gut metagenome; faeces
128
201
+
Cys
GCA
[ENA]
¡û
>WENV181246112
OFFJ01008916
[OFFJ] mouse gut metagenome; faeces
4057
3984
-
Cys
GCA
[ENA]
¡û
>WENV181250475
OFFN01012514
[OFFN] mouse gut metagenome; faeces
669
596
-
Cys
GCA
[ENA]
¡û
>WENV181255549
OFFS01006265
[OFFS] mouse gut metagenome; faeces
2306
2233
-
Cys
GCA
[ENA]
¡û
>WENV181262015
OFFY01000930
[OFFY] mouse gut metagenome; faeces
128
201
+
Cys
GCA
[ENA]
¡û
>WENV181265268
OFGA01050368
[OFGA] mouse gut metagenome; faeces
118
191
+
Cys
GCA
[ENA]
¡û
>WENV181270217
OFGE01055249
[OFGE] mouse gut metagenome; faeces
110
183
+
Cys
GCA
[ENA]
¡û
>WENV181273260
OFGH01000862
[OFGH] mouse gut metagenome; faeces
128
201
+
Cys
GCA
[ENA]
¡û
>WENV181280976
OFGO01004181
[OFGO] mouse gut metagenome; faeces
3081
3154
+
Cys
GCA
[ENA]
¡û
>WENV181282294
OFGP01006179
[OFGP] mouse gut metagenome; faeces
4620
4547
-
Cys
GCA
[ENA]
¡û
>WENV181300307
OFHN01000750
[OFHN] mouse gut metagenome; faeces
128
201
+
Cys
GCA
[ENA]
¡û
>WENV181526112
OGHJ01002543
[OGHJ] metagenome; Human gut stool
8346
8419
+
Cys
GCA
[ENA]
¡û
>WENV181720704
OGPU01044166
[OGPU] human gut metagenome; faeces
764
691
-
Cys
GCA
[ENA]
¡û
>WENV181989656
OHAO01024615
[OHAO] human gut metagenome; faeces
1385
1312
-
Cys
GCA
[ENA]
¡û
>WENV182036004
OHDA01030415
[OHDA] human gut metagenome; feces
851
778
-
Cys
GCA
[ENA]
¡û
>WENV182040652
OHDH01004861
[OHDH] human gut metagenome; feces
2365
2438
+
Cys
GCA
[ENA]
¡û
>WENV182537048
OIXH01002960
[OIXH] human gut metagenome; faeces
15828
15755
-
Cys
GCA
[ENA]
¡û
>W141251983
CBRA020000029
Bacillota
Paenibacillus sp. P22 [CBRA]
41618
41545
-
Cys
GCA
[ENA]
¡û
>W141255882
CBVJ010000080
Bacillota
Paenibacillus gorillae G1 [CBVJ]
22388
22315
-
Cys
GCA
[ENA]
¡û
>WENV182794885
OJSP01070103
[OJSP] human gut metagenome; human gut
514
441
-
Cys
GCA
[ENA]
¡û
>WENV183011959
OLEA01014790
[OLEA] human gut metagenome; human gut
215
288
+
Cys
GCA
[ENA]
¡û
>WENV183038099
OLGB01000103
[OLGB] human gut metagenome; faeces
76238
76165
-
Cys
GCA
[ENA]
¡û
>WENV183090080
OLJW01052283
[OLJW] human gut metagenome; human gut
84
157
+
Cys
GCA
[ENA]
¡û
>WENV183092597
OLLG01000293
[OLLG] soil metagenome; soil
7228
7301
+
Cys
GCA
[ENA]
¡û
>WENV183257804
OLRM01013223
[OLRM] human gut metagenome; faeces
35
108
+
Cys
GCA
[ENA]
¡û
>WENV183306390
OLSX01026569
[OLSX] human gut metagenome; faeces
1769
1696
-
Cys
GCA
[ENA]
¡û
>WENV183502163
OMGS01057184
[OMGS] human gut metagenome; human gut
507
434
-
Cys
GCA
[ENA]
¡û
>WENV183770857
PPYE01450493
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
426
499
+
Cys
GCA
[ENA]
¡û
>WENV170075734
CDZT01044252
[CDZT] gut metagenome; human stools
39181
39108
-
Cys
GCA
[ENA]
¡û
>WENV170078831
CDZV01041217
[CDZV] gut metagenome; human stools
478
551
+
Cys
GCA
[ENA]
¡û
>WENV170594842
FUFK011498969
[FUFK] metagenome; unknown
217
290
+
Cys
GCA
[ENA]
¡û
>WENV170596052
FUFK012083216
[FUFK] metagenome; unknown
228
301
+
Cys
GCA
[ENA]
¡û
>WENV170636476
JFBN01300582
[JFBN] chicken gut metagenome; ceca of Broiler chicken
916
843
-
Cys
GCA
[ENA]
¡û
>WENV170705740
LNAP01000168
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
69647
69574
-
Cys
GCA
[ENA]
¡û
>C181021428
CP016808
Bacillota
Paenibacillus sp. BIHB 4019 [CP016808]
3585556
3585629
+
Cys
GCA
-
¡û
>C191007697
AP019400
Bacillota
Cohnella abietis HS21 [AP019400]
5172931
5172858
-
Cys
GCA
-
¡û
>C191007712
AP019400
Bacillota
Cohnella abietis HS21 [AP019400]
5159924
5159851
-
Cys
GCA
-
¡û
>W1910018487
BDQX01000283
Bacillota
Paenibacillus agaridevorans T-3040 [BDQX]
151
78
-
Cys
GCA
[ENA]
¡û
>W1910067495
BFBX01000100
Bacillota
Paenibacillus sp. 598K [BFBX]
1406
1479
+
Cys
GCA
[ENA]
¡û
>W1910154793
BIMA01000141
Bacillota
Paenibacillus koleovorans NBRC 103111 [BIMA]
14897
14824
-
Cys
GCA
[ENA]
¡û
>W1910154926
BIMD01000044
Bacillota
Paenibacillus humicus NBRC 102415 [BIMD]
41691
41618
-
Cys
GCA
[ENA]
¡û
>W1910940533
NJAR01000010
Bacillota
Paenibacillus castaneae DSM 19417 [NJAR]
1866620
1866547
-
Cys
GCA
[ENA]
¡û
>W1911075504
NMUQ01000001
Bacillota
Paenibacillus herberti R33 [NMUQ]
2772502
2772429
-
Cys
GCA
[ENA]
¡û
>W1911810900
QZCF01000001
Bacillota
Paenibacillus sp. 1011MAR3C5 [QZCF]
1062510
1062437
-
Cys
GCA
[ENA]
¡û
>W1810759093
QPJD01000019
Bacillota
Paenibacillus prosopidis CECT 7506 [QPJD]
1400
1473
+
Cys
GCA
[ENA]
¡û
>W2010078383
BDQX01000283
Bacillota
Paenibacillus agaridevorans T-3040 [BDQX]
151
78
-
Cys
GCA
[ENA]
¡û
>W2010080037
BFBX01000100
Bacillota
Paenibacillus sp. 598K [BFBX]
1406
1479
+
Cys
GCA
[ENA]
¡û
>W2010087728
BIMA01000141
Bacillota
Paenibacillus koleovorans NBRC 103111 [BIMA]
14897
14824
-
Cys
GCA
[ENA]
¡û
>W2010087861
BIMD01000044
Bacillota
Paenibacillus humicus NBRC 102415 [BIMD]
41691
41618
-
Cys
GCA
[ENA]
¡û
>W2010717229
JACHXW010000019
Bacillota
Paenibacillus endophyticus CECT 8234 [JACHXW]
1447
1520
+
Cys
GCA
[ENA]
¡û
>W2010983507
NJAR01000010
Bacillota
Paenibacillus castaneae DSM 19417 [NJAR]
1866620
1866547
-
Cys
GCA
[ENA]
¡û
>W2011004698
NMUQ01000001
Bacillota
Paenibacillus herberti R33 [NMUQ]
2772502
2772429
-
Cys
GCA
[ENA]
¡û
>W2011319354
QWKG01000019
Bacillota
Colidextribacter sp. OB.20 [QWKG]
18792
18865
+
Cys
GCA
[ENA]
¡û
>W2011345558
QZCF01000001
Bacillota
Paenibacillus sp. 1011MAR3C5 [QZCF]
1062510
1062437
-
Cys
GCA
[ENA]
¡û
>W2011391050
RBZM01000003
Bacillota
Cohnella sp. M2MS4P-1 [RBZM]
1387
1460
+
Cys
GCA
[ENA]
¡û
>W2011393199
RCCY01000012
Bacillota
Paenibacillus sp. RU15A [RCCY]
603672
603599
-
Cys
GCA
[ENA]
¡û
>W2011580880
SHLX01000063
Bacillota
Paenibacillus sp. R196 [SHLX]
7385
7312
-
Cys
GCA
[ENA]
¡û
>W2011616842
SKCD01000035
Bacillota
Paenibacillus luteus R-3 [SKCD]
1411
1484
+
Cys
GCA
[ENA]
¡û
>W2011662902
SOMN01000058
Bacillota
Cohnella luojiensis CCTCC AB 208254 [SOMN]
1466
1539
+
Cys
GCA
[ENA]
¡û
>W2011694638
STGF01000041
Bacillota
Paenibacillus sp. SY21-1 [STGF]
40871
40798
-
Cys
GCA
[ENA]
¡û
>W2011957644
UZAR01000009
Bacillota
Intestinimonas timonensis GD4 [UZAR]
78209
78282
+
Cys
GCA
[ENA]
¡û
>W2011957764
UZBF01000001
Bacillota
Intestinimonas massiliensis Marseille-P3064 [UZBF]
1043052
1043125
+
Cys
GCA
[ENA]
¡û
>W2011973576
VCIW01000002
Bacillota
Paenibacillus sp. SYSU_K30003 [VCIW]
1406
1479
+
Cys
GCA
[ENA]
¡û
>W2011973725
VCIX01000089
Bacillota
Paenibacillus sp. py1325 [VCIX]
1378
1451
+
Cys
GCA
[ENA]
¡û
>W2011979785
VDBO01000070
Bacillota
Paenibacillus sinopodophylli CCTCC AB 2016047 [VDBO]
269
196
-
Cys
GCA
[ENA]
¡û
>W2012098335
VNJK01000004
Bacillota
Paenibacillus sp. N4 [VNJK]
1452
1525
+
Cys
GCA
[ENA]
¡û
>W2012392864
WNAO01000003
Bacillota
Pseudoflavonifractor sp. BIOML-A17 [WNAO]
125384
125457
+
Cys
GCA
[ENA]
¡û
>W2012392923
WNAP01000007
Bacillota
Pseudoflavonifractor sp. BIOML-A16 [WNAP]
82540
82467
-
Cys
GCA
[ENA]
¡û
>W2012392968
WNAQ01000003
Bacillota
Pseudoflavonifractor sp. BIOML-A15 [WNAQ]
56730
56803
+
Cys
GCA
[ENA]
¡û
>W2012393126
WNAT01000007
Bacillota
Pseudoflavonifractor sp. BIOML-A11 [WNAT]
211263
211190
-
Cys
GCA
[ENA]
¡û
>W2012393224
WNAV01000003
Bacillota
Pseudoflavonifractor sp. BIOML-A8 [WNAV]
55515
55588
+
Cys
GCA
[ENA]
¡û
>W2012393331
WNAX01000005
Bacillota
Pseudoflavonifractor sp. BIOML-A6 [WNAX]
34174
34247
+
Cys
GCA
[ENA]
¡û
>W2012393478
WNBA01000002
Bacillota
Pseudoflavonifractor sp. BIOML-A3 [WNBA]
56585
56658
+
Cys
GCA
[ENA]
¡û
>W2110098874
CAJFEQ010000177
Bacillota
Flavonifractor sp. An10 [CAJFEQ]
633
560
-
Cys
GCA
[ENA]
¡û
>W2110098966
CAJFFH010000003
Bacillota
Flavonifractor sp. An10 [CAJFFH]
99176
99249
+
Cys
GCA
[ENA]
¡û
>W2110099870
CAJFIA010000196
Bacillota
Flavonifractor sp. An10 [CAJFIA]
2153
2080
-
Cys
GCA
[ENA]
¡û
>W2110101309
CAJFMP010000002
Bacillota
Flavonifractor sp. An10 [CAJFMP]
28658
28731
+
Cys
GCA
[ENA]
¡û
>W2110103685
CAJFWC010000025
Bacillota
Flavonifractor sp. An10 [CAJFWC]
8402
8329
-
Cys
GCA
[ENA]
¡û
>W2110221181
JACJIW010000001
Bacillota
Flavonifractor plautii An856 [JACJIW]
20608
20535
-
Cys
GCA
[ENA]
¡û
>W2110241144
JACOEA010000001
Bacillota
Intestinimonas gabonensis NSJ-47 [JACOEA]
573170
573097
-
Cys
GCA
[ENA]
¡û
>W2110246117
JACOPP010000039
Bacillota
Lawsonibacter sp. NSJ-51 [JACOPP]
18306
18379
+
Cys
GCA
[ENA]
¡û
>W2110246142
JACOPQ010000002
Bacillota
Lawsonibacter sp. NSJ-52 [JACOPQ]
247003
246930
-
Cys
GCA
[ENA]
¡û
>W2110259014
JACSOA010000113
Bacillota
Intestinimonas butyriciproducens An503 [JACSOA]
6421
6494
+
Cys
GCA
[ENA]
¡û
>W2110284047
JACXIZ010000060
Bacillota
Paenibacillus sp. IB182496 [JACXIZ]
35716
35643
-
Cys
GCA
[ENA]
¡û
>W2110289704
JACYTN010000008
Bacillota
Paenibacillus sp. CAU 1523 [JACYTN]
134754
134681
-
Cys
GCA
[ENA]
¡û
>W2110343269
JADMVA010000004
Bacillota
Flavonifractor plautii D31t1_170403_E8 [JADMVA]
45041
45114
+
Cys
GCA
[ENA]
¡û
>W2110343345
JADMVC010000032
Bacillota
Flavonifractor plautii BSD2780061687_150420_F5 [JADMVC]
41608
41681
+
Cys
GCA
[ENA]
¡û
>W2110347359
JADNAN010000189
Bacillota
Flavonifractor plautii D6t1_180914_E2 [JADNAN]
7445
7518
+
Cys
GCA
[ENA]
¡û
>W2110351206
JADNGA010000002
Bacillota
Flavonifractor plautii 1001283B150304_161114_B1 [JADNGA]
165658
165731
+
Cys
GCA
[ENA]
¡û
>W2110364451
JADOZR010000146
Bacillota
Flavonifractor plautii J1101653_170612_C3 [JADOZR]
96
23
-
Cys
GCA
[ENA]
¡û
>W2110460224
JAFBDP010000024
Bacillota
Paenibacillus sacheonensis DSM 23054 [JAFBDP]
1291
1364
+
Cys
GCA
[ENA]
¡û
>W2110539460
JAGGLB010000058
Bacillota
Paenibacillus eucommiae DSM 26048 [JAGGLB]
1502
1575
+
Cys
GCA
[ENA]
¡û
>W2110580570
JAGXJW010000009
Bacillota
Cohnella sp. GbtcB17 [JAGXJW]
10168
10241
+
Cys
GCA
[ENA]
¡û
>W2110626425
JAHMHW010000017
Bacillota
Paenibacillus sp. N4 [JAHMHW]
63
136
+
Cys
GCA
[ENA]
¡û
>C211132185
CP060293
Bacillota
Paenibacillus sp. PAMC21692 [CP060293]
3047837
3047910
+
Cys
GCA
-
¡û
>C211340695
CP075889
Bacillota
Paenibacillus agaridevorans HCL2020 [CP075889]
155242
155315
+
Cys
GCA
-
¡û
>W2110720738
JAJBOD010000010
Bacillota
Flavonifractor plautii MSK.9.16 [JAJBOD]
43036
43109
+
Cys
GCA
[ENA]
¡û
>C231016857
AP025583
Bacillota
Oscillospiraceae bacterium CE91-St40 [AP025583]
1512138
1512211
+
Cys
GCA
-
¡û
>C231016926
AP025584
Bacillota
Oscillospiraceae bacterium CE91-St41 [AP025584]
2470904
2470831
-
Cys
GCA
-
¡û
>W2110739205
JAJEQY010000050
Bacillota
Intestinimonas sp. CLA-AA-H199 [JAJEQY]
25123
25050
-
Cys
GCA
[ENA]
¡û
>C231509630
CP107198
Bacillota
Flavonifractor plautii [CP107198]
4167945
4167872
-
Cys
GCA
-
¡û
>C241024586
CP022655
Bacillota
Paenibacillus sp. RUD330 [CP022655]
1556757
1556830
+
Cys
GCA
-
¡û
>W1511541260
JZEJ01000001
Bacillota
Paenibacillus sp. D9 [JZEJ]
5229972
5230045
+
Cys
GCA
[ENA]
¡û
>W1511577191
LAQO01000018
Bacillota
Paenibacillus algorifonticola XJ259 [LAQO]
188548
188475
-
Cys
GCA
[ENA]
¡û
>W1511698277
LGHP01000003
Bacillota
Bacillus sp. FJAT-28004 [LGHP]
2105
2178
+
Cys
GCA
[ENA]
¡û
>C161087425
CP015406
Bacillota
Flavonifractor plautii YL31 [CP015406]
1266073
1266000
-
Cys
GCA
[Ensembl]
¡û
>W1610189797
FBXW01000033
Bacillota
Intestinimonas gabonensis GM5 [FBXW]
230955
230882
-
Cys
GCA
[ENA]
¡û
>W1610734614
LMLV01000032
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
1437
1510
+
Cys
GCA
[ENA]
¡û
>W1610742007
LMRV01000028
Bacillota
Paenibacillus sp. Soil522 [LMRV]
119120
119047
-
Cys
GCA
[ENA]
¡û
>W1611057231
MAQX01000002
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
198268
198195
-
Cys
GCA
[ENA]
¡û
>W1710191413
FBXW01000033
Bacillota
Intestinimonas gabonensis GM5 [FBXW]
230955
230882
-
Cys
GCA
[ENA]
¡û
>W1710556395
FOKE01000005
Bacillota
Cohnella sp. OV330 [FOKE]
526165
526092
-
Cys
GCA
[ENA]
¡û
>W1710560622
FONN01000013
Bacillota
Paenibacillus algorifonticola [FONN]
1728
1801
+
Cys
GCA
[ENA]
¡û
>W1710567931
FOTE01000003
Bacillota
Paenibacillus sp. 1_12 [FOTE]
1043
1116
+
Cys
GCA
[ENA]
¡û
>W1710595431
FTLY01000003
Bacillota
Paenibacillus sp. RU4X [FTLY]
603672
603599
-
Cys
GCA
[ENA]
¡û
>W1710597329
FTND01000003
Bacillota
Paenibacillus sp. RU4T [FTND]
1365
1438
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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