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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.451748 (14 seq.)
>W1711136353
LVAC01000023
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
235110
235185
+
Glu
TTC
[ENA]
¡û
>C171057221
CP017111
Campylobacterota
Sulfurospirillum halorespirans DSM 13726 DSM 13726; PCE-M2 [CP017111]
650010
649935
-
Glu
TTC
-
¡û
>WENV170640750
JFJP01024328
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4490
4415
-
Glu
TTC
[ENA]
¢þ
>C181078353
CP023275
Campylobacterota
Sulfurospirillum diekertiae JPD-1 [CP023275]
559075
559000
-
Glu
TTC
-
¡û
>W09110075
ABUV01000001
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [ABUV]
273519
273594
+
Glu
TTC
[ENA]
¡û
>W141814453
JQGK01000018
Campylobacterota
Sulfurospirillum sp. SCADC [JQGK]
58351
58426
+
Glu
TTC
[ENA]
¡û
>C151018397
CP007201
Campylobacterota
Sulfurospirillum multivorans DSM 12446 [CP007201]
621387
621312
-
Glu
TTC
[Ensembl]
¡û
>W1510014713
BBQE01000002
Campylobacterota
Sulfurospirillum cavolei NBRC 109482 [BBQE]
313138
313213
+
Glu
TTC
[ENA]
¡û
>W1510014757
BBQF01000001
Campylobacterota
Sulfurospirillum arsenophilum NBRC 109478 [BBQF]
532801
532726
-
Glu
TTC
[ENA]
¡û
>C10111338
CP001816
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [CP001816]
467791
467716
-
Glu
TTC
[Ensembl]
¡û
>C121011185
CP003333
Campylobacterota
Sulfurospirillum barnesii SES-3 [CP003333]
497189
497114
-
Glu
TTC
[Ensembl]
¡û
>C161001385
AP014723
Campylobacterota
Sulfurospirillum sp. UCH001 [AP014723]
549430
549355
-
Glu
TTC
-
¡û
>C161001410
AP014724
Campylobacterota
Sulfurospirillum cavolei UCH003 [AP014724]
2191019
2191094
+
Glu
TTC
-
¡û
>W1610947473
LVAC01000023
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
235110
235185
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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