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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45185 (9 seq.)
>A171000365
CP001140
Thermoproteota
Desulfurococcus amylolyticus 1221n [CP001140]
991375
991290
-
Leu
GAG
-
¡û
>A171001524
CP002051
Thermoproteota
Staphylothermus hellenicus DSM 12710 [CP002051]
25350
25263
-
Leu
GAG
-
¡û
>A171002979
CP003321
Thermoproteota
Desulfurococcus amylolyticus DSM 16532 [CP003321]
1108847
1108760
-
Leu
GAG
-
¡û
>A171003233
CP003531
Thermoproteota
Thermogladius calderae 1633 [CP003531]
446917
447002
+
Leu
GAG
-
¡û
>WENV181229156
OFEJ01000793
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
1072
1157
+
Leu
GAG
[ENA]
¢þ
>WENV181229399
OFEJ01008855
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
979
1064
+
Leu
GAG
[ENA]
¢þ
>WENV181285429
OFGS01000335
[OFGS] hot springs metagenome; Water and soil
5792
5878
+
Leu
CAG
[ENA]
¢þ
>At0383
CP000575
Thermoproteota
Staphylothermus marinus F1 [CP000575]
767378
767465
+
Leu
GAG
[Ensembl]
¡û
>W1610001724
ADGW01000004
Thermoproteota
Staphylothermus hellenicus DSM 12710 [ADGW]
140425
140512
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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