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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452007 (67 seq.)
>W1711386794
MEFU01000014
Betaproteobacteria
Comamonadaceae bacterium SCN 68-20 [MEFU]
93938
94011
+
Cys
GCA
[ENA]
¡û
>W1711386845
MEFV01000007
Betaproteobacteria
Comamonas sp. SCN 67-35 [MEFV]
93356
93283
-
Cys
GCA
[ENA]
¡û
>W1711502144
MKSJ01000262
Betaproteobacteria
Burkholderiales bacterium 66-5 [MKSJ]
38607
38534
-
Cys
GCA
[ENA]
¡û
>W1711504549
MKUR01000010
Betaproteobacteria
Burkholderiales bacterium 66-26 [MKUR]
93349
93276
-
Cys
GCA
[ENA]
¡û
>W1711504607
MKUS01000048
Betaproteobacteria
Burkholderiales bacterium 68-12 [MKUS]
59099
59172
+
Cys
GCA
[ENA]
¡û
>W1711504653
MKUT01000289
Betaproteobacteria
Burkholderiales bacterium 68-20 [MKUT]
48929
48856
-
Cys
GCA
[ENA]
¡û
>C000358
CP000539
Betaproteobacteria
Acidovorax sp. JS42 [CP000539]
1408450
1408523
+
Cys
GCA
[Ensembl]
¡û
>WENV180013681
FMSI01127507
[FMSI] soil metagenome; Soil
80
153
+
Cys
GCA
[ENA]
¡û
>WENV180304742
OBJI01349383
[OBJI] soil metagenome; soil
29
102
+
Cys
GCA
[ENA]
¡û
>WENV181168462
OEIU01378137
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
133
206
+
Cys
GCA
[ENA]
¡û
>WENV181227774
OFDN01041864
[OFDN] hot springs metagenome; Water
1024
951
-
Cys
GCA
[ENA]
¡û
>WENV181401457
OFTX01000255
[OFTX] sludge metagenome; sludge
422
349
-
Cys
GCA
[ENA]
¡û
>WENV181402533
OFTY01003564
[OFTY] sludge metagenome; sludge
422
349
-
Cys
GCA
[ENA]
¡û
>W141169065
AXVM01000007
Betaproteobacteria
Comamonas badia DSM 17552 [AXVM]
33856
33929
+
Cys
GCA
[ENA]
¡û
>W141238144
BBJX01000009
Betaproteobacteria
Comamonas granuli NBRC 101663 [BBJX]
119530
119603
+
Cys
GCA
[ENA]
¡û
>WENV183635781
OOIX01007841
[OOIX] human gut metagenome; mucous membran biopsy from the gut
565
492
-
Cys
GCA
[ENA]
¡û
>WENV183668441
ORJL010739646
[ORJL] groundwater metagenome; groundwater
3178
3105
-
Cys
GCA
[ENA]
¡û
>WENV170019019
BBPD01003081
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
3400
3473
+
Cys
GCA
[ENA]
¡û
>WENV170020066
BBPE01002603
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
11480
11553
+
Cys
GCA
[ENA]
¡û
>WENV170714766
LNFM01099674
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1393
1320
-
Cys
GCA
[ENA]
¡û
>C181019014
CP016278
Betaproteobacteria
Diaphorobacter nitroreducens SL-205 [CP016278]
1724981
1724908
-
Cys
GCA
-
¡û
>W09105949
AASD01000011
Betaproteobacteria
Acidovorax sp. JS42 [AASD]
2492
2419
-
Cys
GCA
[ENA]
¡û
>W09117924
ACCM01000001
Betaproteobacteria
[Acidovorax] ebreus TPSY [ACCM]
199379
199306
-
Cys
GCA
[ENA]
¡û
>C09104044
CP001392
Betaproteobacteria
[Acidovorax] ebreus TPSY [CP001392]
1189944
1190017
+
Cys
GCA
[Ensembl]
¡û
>W1910699713
MERU01000004
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_63_240 [MERU]
13891
13818
-
Cys
GCA
[ENA]
¡û
>W1910699715
MERU01000004
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_63_240 [MERU]
9435
9362
-
Cys
GCA
[ENA]
¡û
>W1910803611
MTBE01000031
Betaproteobacteria
Diaphorobacter sp. LR2014-1 [MTBE]
47717
47790
+
Cys
GCA
[ENA]
¡û
>W1911701421
QNUI01000007
Betaproteobacteria
Comamonadaceae bacterium YIM 73032 [QNUI]
16281
16208
-
Cys
GCA
[ENA]
¡û
>W1911702203
QOAZ01000060
Betaproteobacteria
Comamonadaceae bacterium SYSU G00088 [QOAZ]
5108
5181
+
Cys
GCA
[ENA]
¡û
>SRA1003473
SRR002326.489153
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
19
92
+
Cys
GCA
[SRA]
>W2010642099
JABWMJ010000004
Betaproteobacteria
Schlegelella sp. ID0723 [JABWMJ]
220800
220873
+
Cys
GCA
[ENA]
¡û
>W2010682299
JACEIE010000005
Betaproteobacteria
Ramlibacter sp. CGMCC 1.13660 [JACEIE]
375894
375821
-
Cys
GCA
[ENA]
¡û
>W2010833139
MERU01000004
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_63_240 [MERU]
13891
13818
-
Cys
GCA
[ENA]
¡û
>W2010833141
MERU01000004
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_63_240 [MERU]
9435
9362
-
Cys
GCA
[ENA]
¡û
>W2010833730
MESK01000001
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_99 [MESK]
27177
27250
+
Cys
GCA
[ENA]
¡û
>W2010911433
MTBE01000031
Betaproteobacteria
Diaphorobacter sp. LR2014-1 [MTBE]
47717
47790
+
Cys
GCA
[ENA]
¡û
>W2011277961
QNUI01000007
Betaproteobacteria
Comamonadaceae bacterium YIM 73032 [QNUI]
16281
16208
-
Cys
GCA
[ENA]
¡û
>W2011278818
QOAZ01000060
Betaproteobacteria
Comamonadaceae bacterium SYSU G00088 [QOAZ]
5108
5181
+
Cys
GCA
[ENA]
¡û
>W2011410671
RDQO01000003
Betaproteobacteria
Corticibacter populi DSM 105136 [RDQO]
466257
466330
+
Cys
GCA
[ENA]
¡û
>W2011443379
RJVL01000007
Betaproteobacteria
Diaphorobacter nitroreducens DSM 15985 [RJVL]
236201
236128
-
Cys
GCA
[ENA]
¡û
>W2011490120
RSED01000008
Betaproteobacteria
Aquabacterium sp. SJQ9 [RSED]
64041
64114
+
Cys
GCA
[ENA]
¡û
>W2011538221
SCMV01000023
Betaproteobacteria
Comamonadaceae bacterium 2PF [SCMV]
37525
37452
-
Cys
GCA
[ENA]
¡û
>W2011538223
SCMV01000023
Betaproteobacteria
Comamonadaceae bacterium 2PF [SCMV]
36862
36789
-
Cys
GCA
[ENA]
¡û
>W2011577678
SGWR01000004
Betaproteobacteria
Corticibacter populi DSM 105136 [SGWR]
77497
77424
-
Cys
GCA
[ENA]
¡û
>W2011622958
SLXH01000008
Betaproteobacteria
Simplicispira metamorpha DSM 1837 [SLXH]
63902
63975
+
Cys
GCA
[ENA]
¡û
>W2011637415
SMLL01000008
Betaproteobacteria
Ramlibacter rhizophilus CCTCC AB2015357 [SMLL]
115450
115377
-
Cys
GCA
[ENA]
¡û
>W2011670968
SPMY01000035
Betaproteobacteria
Candidatus Accumulibacter phosphatis SBR_S [SPMY]
41073
41146
+
Cys
GCA
[ENA]
¡û
>W2012426753
WSEL01000003
Betaproteobacteria
Ramlibacter sp. MAH-25 [WSEL]
375894
375821
-
Cys
GCA
[ENA]
¡û
>W2110305839
JADDOJ010000015
Betaproteobacteria
Ramlibacter aquaticus LMG 30558 [JADDOJ]
19920
19847
-
Cys
GCA
[ENA]
¡û
>W2110440077
JAEQNA010000001
Betaproteobacteria
Ramlibacter sp. AW1 [JAEQNA]
1188685
1188612
-
Cys
GCA
[ENA]
¡û
>C201110544
CP042344
Betaproteobacteria
Comamonas sp. NLF-7-7 NLF 7-7 [CP042344]
2667073
2667146
+
Cys
GCA
-
¡û
>C211206020
CP065406
Betaproteobacteria
Diaphorobacter sp. JS3051 [CP065406]
4010567
4010494
-
Cys
GCA
-
¡û
>C211362942
CP078069
Betaproteobacteria
Comamonas sp. NLF-1-9 [CP078069]
1347182
1347109
-
Cys
GCA
-
¡û
>C211382625
CP080761
Betaproteobacteria
Diaphorobacter sp. MNS-0 [CP080761]
1425650
1425723
+
Cys
GCA
-
¡û
>C231065918
CP053915
Betaproteobacteria
Acidovorax sp. YS12 [CP053915]
4780278
4780351
+
Cys
GCA
-
¡û
>C231343266
CP094346
Betaproteobacteria
Diaphorobacter sp. LI3 [CP094346]
3218005
3217932
-
Cys
GCA
-
¡û
>C231565446
CP115182
Betaproteobacteria
Diaphorobacter sp. ED-3 [CP115182]
1487995
1488068
+
Cys
GCA
-
¡û
>C241156635
CP053553
Betaproteobacteria
Diaphorobacter sp. JS3050 [CP053553]
1414953
1415026
+
Cys
GCA
-
¡û
>C241292016
CP129980
Betaproteobacteria
Diaphorobacter sp. C33 [CP129980]
473615
473688
+
Cys
GCA
-
¡û
>C11100628
CP002657
Betaproteobacteria
Alicycliphilus denitrificans K601 [CP002657]
1553120
1553193
+
Cys
GCA
[Ensembl]
¡û
>W1510742437
CYIG01000037
Betaproteobacteria
Paenacidovorax caeni R-24608 [CYIG]
2267
2194
-
Cys
GCA
[ENA]
¡û
>W1610042811
BAZJ01000013
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
6589
6662
+
Cys
GCA
[ENA]
¡û
>W1610604918
LFRI01000516
Betaproteobacteria
Aquabacterium parvum [LFRI]
12024
11951
-
Cys
GCA
[ENA]
¡û
>W1610604920
LFRI01000516
Betaproteobacteria
Aquabacterium parvum [LFRI]
11428
11355
-
Cys
GCA
[ENA]
¡û
>W1710039971
BAZJ01000013
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
6589
6662
+
Cys
GCA
[ENA]
¡û
>W1710726361
LFRI01000516
Betaproteobacteria
Aquabacterium parvum [LFRI]
12024
11951
-
Cys
GCA
[ENA]
¡û
>W1710726363
LFRI01000516
Betaproteobacteria
Aquabacterium parvum [LFRI]
11428
11355
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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