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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452040 (72 seq.)
>W1711046903
LROR01000034
Bacillota
Clostridium coskatii [LROR]
114774
114849
+
Lys
TTT
[ENA]
¡û
>W1711047006
LROS01000066
Bacillota
Clostridium ragsdalei P11 [LROS]
21086
21011
-
Lys
TTT
[ENA]
¡û
>C171019434
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
55214
55289
+
Lys
TTT
-
¡û
>C171019442
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
87912
87987
+
Lys
TTT
-
¡û
>C171019451
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
1454418
1454493
+
Lys
TTT
-
¡û
>C171019458
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
1455125
1455200
+
Lys
TTT
-
¡û
>C171019513
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
55214
55289
+
Lys
TTT
-
¡û
>C171019521
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
87912
87987
+
Lys
TTT
-
¡û
>C171019530
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
1453453
1453528
+
Lys
TTT
-
¡û
>C171019537
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
1454160
1454235
+
Lys
TTT
-
¡û
>W131082822
ANZB01000009
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
154410
154485
+
Lys
TTT
[ENA]
¡û
>W131082829
ANZB01000009
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
155117
155192
+
Lys
TTT
[ENA]
¡û
>WENV170004631
AGTN01742122
[AGTN] bioreactor metagenome; poplar biomass
42
117
+
Lys
TTT
[ENA]
¢þ
>WENV170700031
LIDZ01000390
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
50576
50501
-
Lys
TTT
[ENA]
¢þ
>WENV170700041
LIDZ01000390
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
49472
49397
-
Lys
TTT
[ENA]
¢þ
>C181047814
CP020953
Bacillota
Clostridium drakei SL1 [CP020953]
5518570
5518645
+
Lys
TTT
-
¡û
>C181047851
CP020953
Bacillota
Clostridium drakei SL1 [CP020953]
4906745
4906670
-
Lys
TTT
-
¡û
>C181047862
CP020953
Bacillota
Clostridium drakei SL1 [CP020953]
4905759
4905684
-
Lys
TTT
-
¡û
>C181047877
CP020953
Bacillota
Clostridium drakei SL1 [CP020953]
4285509
4285434
-
Lys
TTT
-
¡û
>W141565600
JIBU02000043
Bacillota
Clostridium drakei [JIBU]
8194
8119
-
Lys
TTT
[ENA]
¡û
>W141565608
JIBU02000045
Bacillota
Clostridium drakei [JIBU]
75579
75654
+
Lys
TTT
[ENA]
¡û
>W141565626
JIBU02000075
Bacillota
Clostridium drakei [JIBU]
3909
3834
-
Lys
TTT
[ENA]
¡û
>W141565637
JIBU02000113
Bacillota
Clostridium drakei [JIBU]
278
203
-
Lys
TTT
[ENA]
¡û
>W141569497
JIDX01000003
Bacillota
Clostridium scatologenes [JIDX]
42603
42678
+
Lys
TTT
[ENA]
¡û
>W141569574
JIDX01000068
Bacillota
Clostridium scatologenes [JIDX]
96
21
-
Lys
TTT
[ENA]
¡û
>W141569590
JIDX01000142
Bacillota
Clostridium scatologenes [JIDX]
102
177
+
Lys
TTT
[ENA]
¡û
>W141569607
JIDX01000159
Bacillota
Clostridium scatologenes [JIDX]
96
21
-
Lys
TTT
[ENA]
¡û
>W09135117
ACVI01000173
Bacillota
Clostridium carboxidivorans P7 [ACVI]
1921
1996
+
Lys
TTT
[ENA]
¡û
>W09135133
ACVI01000202
Bacillota
Clostridium carboxidivorans P7 [ACVI]
5
80
+
Lys
TTT
[ENA]
¡û
>W141702305
JMLK01000003
Bacillota
Clostridium akagii DSM 12554 [JMLK]
140659
140734
+
Lys
TTT
[ENA]
¡û
>W141702346
JMLK01000036
Bacillota
Clostridium akagii DSM 12554 [JMLK]
20398
20323
-
Lys
TTT
[ENA]
¡û
>W141803769
JPGY01000007
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
106661
106586
-
Lys
TTT
[ENA]
¡û
>W141803776
JPGY01000007
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
105954
105879
-
Lys
TTT
[ENA]
¡û
>W141803797
JPGY01000009
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
613988
613913
-
Lys
TTT
[ENA]
¡û
>W141803829
JPGY01000010
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
5145
5070
-
Lys
TTT
[ENA]
¡û
>W1810367514
PVXP01000001
Bacillota
Clostridium luticellarii DSM 29923 [PVXP]
78188
78113
-
Lys
TTT
[ENA]
¡û
>C151047010
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
55214
55289
+
Lys
TTT
[Ensembl]
¡û
>C151047018
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
87912
87987
+
Lys
TTT
[Ensembl]
¡û
>C151047027
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
1453457
1453532
+
Lys
TTT
[Ensembl]
¡û
>C151047034
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
1454164
1454239
+
Lys
TTT
[Ensembl]
¡û
>C151047089
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
55214
55289
+
Lys
TTT
[Ensembl]
¡û
>C151047097
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
87912
87987
+
Lys
TTT
[Ensembl]
¡û
>C151047106
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
1453457
1453532
+
Lys
TTT
[Ensembl]
¡û
>C151047113
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
1454164
1454239
+
Lys
TTT
[Ensembl]
¡û
>C151062278
CP009933
Bacillota
Clostridium scatologenes ATCC 25775 [CP009933]
5003709
5003784
+
Lys
TTT
[Ensembl]
¡û
>C151062292
CP009933
Bacillota
Clostridium scatologenes ATCC 25775 [CP009933]
5598135
5598210
+
Lys
TTT
[Ensembl]
¡û
>C151062303
CP009933
Bacillota
Clostridium scatologenes ATCC 25775 [CP009933]
4382326
4382251
-
Lys
TTT
[Ensembl]
¡û
>C151086640
CP011803
Bacillota
Clostridium carboxidivorans P7 [CP011803]
4668339
4668414
+
Lys
TTT
[Ensembl]
¡û
>C151086681
CP011803
Bacillota
Clostridium carboxidivorans P7 [CP011803]
4122485
4122410
-
Lys
TTT
[Ensembl]
¡û
>C151086696
CP011803
Bacillota
Clostridium carboxidivorans P7 [CP011803]
3405420
3405345
-
Lys
TTT
[Ensembl]
¡û
>W11115418
ADEK01000016
Bacillota
Clostridium carboxidivorans P7 [ADEK]
41111
41186
+
Lys
TTT
[ENA]
¡û
>W11115449
ADEK01000068
Bacillota
Clostridium carboxidivorans P7 [ADEK]
7
82
+
Lys
TTT
[ENA]
¡û
>W121123995
BAEV01000014
Bacillota
Clostridium arbusti SL206 [BAEV]
40793
40718
-
Lys
TTT
[ENA]
¡û
>W121124002
BAEV01000014
Bacillota
Clostridium arbusti SL206 [BAEV]
40161
40086
-
Lys
TTT
[ENA]
¡û
>W121124053
BAEV01000241
Bacillota
Clostridium arbusti SL206 [BAEV]
6
81
+
Lys
TTT
[ENA]
¡û
>C131002499
CP003261
Bacillota
Clostridium pasteurianum BC1 [CP003261]
122395
122470
+
Lys
TTT
[Ensembl]
¡û
>C131002501
CP003261
Bacillota
Clostridium pasteurianum BC1 [CP003261]
144945
145020
+
Lys
TTT
[Ensembl]
¡û
>C131002512
CP003261
Bacillota
Clostridium pasteurianum BC1 [CP003261]
1524697
1524772
+
Lys
TTT
[Ensembl]
¡û
>C131002519
CP003261
Bacillota
Clostridium pasteurianum BC1 [CP003261]
1525340
1525415
+
Lys
TTT
[Ensembl]
¡û
>W1610635670
LITQ01000012
Bacillota
Clostridium coskatii [LITQ]
116287
116362
+
Lys
TTT
[ENA]
¡û
>W1610635817
LITT01000026
Bacillota
Clostridium ljungdahlii [LITT]
20331
20256
-
Lys
TTT
[ENA]
¡û
>W1610635831
LITT01000035
Bacillota
Clostridium ljungdahlii [LITT]
291929
291854
-
Lys
TTT
[ENA]
¡û
>W1610888032
LROR01000034
Bacillota
Clostridium coskatii [LROR]
114774
114849
+
Lys
TTT
[ENA]
¡û
>W1610888135
LROS01000066
Bacillota
Clostridium ragsdalei P11 [LROS]
21086
21011
-
Lys
TTT
[ENA]
¡û
>W1710605729
FWXH01000002
Bacillota
Clostridium acidisoli DSM 12555 [FWXH]
1022050
1021975
-
Lys
TTT
[ENA]
¡û
>W1710605764
FWXH01000020
Bacillota
Clostridium acidisoli DSM 12555 [FWXH]
45826
45901
+
Lys
TTT
[ENA]
¡û
>W1710605784
FWXH01000041
Bacillota
Clostridium acidisoli DSM 12555 [FWXH]
15
90
+
Lys
TTT
[ENA]
¡û
>W1710605785
FWXH01000042
Bacillota
Clostridium acidisoli DSM 12555 [FWXH]
140
215
+
Lys
TTT
[ENA]
¡û
>W1710731279
LFYL01000004
Bacillota
Clostridium pasteurianum [LFYL]
23147
23072
-
Lys
TTT
[ENA]
¡û
>W1710770378
LITQ01000012
Bacillota
Clostridium coskatii [LITQ]
116287
116362
+
Lys
TTT
[ENA]
¡û
>W1710770590
LITT01000026
Bacillota
Clostridium ljungdahlii [LITT]
20331
20256
-
Lys
TTT
[ENA]
¡û
>W1710770604
LITT01000035
Bacillota
Clostridium ljungdahlii [LITT]
291929
291854
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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