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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452088 (41 seq.)
>W1711377890
MDZH01000129
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
44193
44121
-
Gln
TTG
[ENA]
¡û
>W131063389
ANKQ01000002
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
43207
43135
-
Gln
TTG
[ENA]
¡û
>W131087179
AOCI01000144
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
1899
1971
+
Gln
TTG
[ENA]
¡û
>W131203778
ASZQ01000256
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
2203
2275
+
Gln
TTG
[ENA]
¡û
>W1711603042
MOLN01000178
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
2505
2433
-
Gln
TTG
[ENA]
¡û
>W1711772021
MVGR01000004
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
816331
816403
+
Gln
TTG
[ENA]
¡û
>C171016654
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
1558778
1558706
-
Gln
TTG
-
¡û
>C171112088
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
259096
259024
-
Gln
TTG
-
¡û
>WENV180110853
OAPN01010216
[OAPN] marine metagenome; 2011
464
392
-
Gln
TTG
[ENA]
¢þ
>W141065578
AQPY01000814
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
2223
2151
-
Gln
TTG
[ENA]
¡û
>W141242385
CAIH01000309
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
25806
25878
+
Gln
TTG
[ENA]
¡û
>W141242407
CAII01000290
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
24941
25013
+
Gln
TTG
[ENA]
¡û
>W141242467
CAIJ01000612
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
2863
2791
-
Gln
TTG
[ENA]
¡û
>W141242492
CAIK01000227
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
38552
38624
+
Gln
TTG
[ENA]
¡û
>W141242547
CAIL01000293
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
22910
22982
+
Gln
TTG
[ENA]
¡û
>W141242570
CAIM01000430
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
13584
13512
-
Gln
TTG
[ENA]
¡û
>W141242600
CAIN01000112
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
6164
6236
+
Gln
TTG
[ENA]
¡û
>W141242663
CAIO01000489
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
4707
4635
-
Gln
TTG
[ENA]
¡û
>W141242698
CAIP01000421
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
15283
15355
+
Gln
TTG
[ENA]
¡û
>W141242739
CAIQ01000531
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
14376
14448
+
Gln
TTG
[ENA]
¡û
>C08006374
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
2388169
2388097
-
Gln
TTG
[Ensembl]
¡û
>WENV170680617
LFEF01003422
[LFEF] freshwater metagenome; waterbloom
46112
46040
-
Gln
TTG
[ENA]
¢þ
>C181046181
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
2922812
2922740
-
Gln
TTG
-
¡û
>C191007287
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
342403
342331
-
Gln
TTG
-
¡û
>W1910020371
BDSG01000134
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
6017
6089
+
Gln
TTG
[ENA]
¡û
>W1910020375
BDSM01000001
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
14965
15037
+
Gln
TTG
[ENA]
¡û
>W1910038647
BEIU01000001
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
233625
233553
-
Gln
TTG
[ENA]
¡û
>W1910038685
BEIV01000010
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
76169
76241
+
Gln
TTG
[ENA]
¡û
>W1910067354
BEYQ01000004
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
108920
108848
-
Gln
TTG
[ENA]
¡û
>W1910067417
BFAC01000022
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
10111
10183
+
Gln
TTG
[ENA]
¡û
>W1910142329
BIFY01000049
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
26123
26195
+
Gln
TTG
[ENA]
¡û
>W1910665596
MCIH01000244
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
20958
20886
-
Gln
TTG
[ENA]
¡û
>W1910768687
MOLZ01000165
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
7563
7491
-
Gln
TTG
[ENA]
¡û
>C151079385
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
1564224
1564152
-
Gln
TTG
[Ensembl]
¡û
>C151080697
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
3684128
3684200
+
Gln
TTG
-
¡û
>W1510013621
BBPA01000024
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
45620
45692
+
Gln
TTG
[ENA]
¡û
>W1610550803
JXYX01000001
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
37122
37194
+
Gln
TTG
[ENA]
¡û
>W1710004733
AJHB01000785
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
1398
1326
-
Gln
TTG
[ENA]
¡û
>W1710005082
AJUS01000836
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
1398
1326
-
Gln
TTG
[ENA]
¡û
>W1710005155
AJUU01000782
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
1398
1326
-
Gln
TTG
[ENA]
¡û
>W1710660680
JXYX01000001
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
37122
37194
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK