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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452089 (42 seq.)
>W131063392
ANKQ01000003
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
458593
458667
+
Arg
CCG
[ENA]
¡û
>W131087177
AOCI01000135
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
32124
32050
-
Arg
CCG
[ENA]
¡û
>W131203770
ASZQ01000231
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
70897
70971
+
Arg
CCG
[ENA]
¡û
>W1711377893
MDZH01000130
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
132329
132403
+
Arg
CCG
[ENA]
¡û
>W1711603012
MOLN01000001
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
43355
43281
-
Arg
CCG
[ENA]
¡û
>W1711772011
MVGR01000003
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
230805
230879
+
Arg
CCG
[ENA]
¡û
>C171016657
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
1147808
1147734
-
Arg
CCG
-
¡û
>C171112072
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
4836182
4836108
-
Arg
CCG
-
¡û
>W141065567
AQPY01000673
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
3787
3713
-
Arg
CCG
[ENA]
¡û
>W141242378
CAIH01000247
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
7234
7308
+
Arg
CCG
[ENA]
¡û
>W141242425
CAII01000658
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
3383
3309
-
Arg
CCG
[ENA]
¡û
>W141242456
CAIJ01000387
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
1175
1101
-
Arg
CCG
[ENA]
¡û
>W141242494
CAIK01000253
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
4062
3988
-
Arg
CCG
[ENA]
¡û
>W141242530
CAIL01000163
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
28749
28675
-
Arg
CCG
[ENA]
¡û
>W141242557
CAIM01000192
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
3377
3303
-
Arg
CCG
[ENA]
¡û
>W141242597
CAIN01000098
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
7484
7410
-
Arg
CCG
[ENA]
¡û
>W141242664
CAIO01000578
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
1070
1144
+
Arg
CCG
[ENA]
¡û
>W141242700
CAIP01000424
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
1004
930
-
Arg
CCG
[ENA]
¡û
>W141242736
CAIQ01000460
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
1012
1086
+
Arg
CCG
[ENA]
¡û
>C08006356
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
4646492
4646566
+
Arg
CCG
[Ensembl]
¡û
>WENV170680721
LFEF01014463
[LFEF] freshwater metagenome; waterbloom
42811
42885
+
Arg
CCG
[ENA]
¢þ
>C181046184
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
2189339
2189265
-
Arg
CCG
-
¡û
>C191007258
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
2529351
2529425
+
Arg
CCG
-
¡û
>W1910020352
BDSG01000045
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
37137
37211
+
Arg
CCG
[ENA]
¡û
>W1910020383
BDSM01000004
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
162725
162651
-
Arg
CCG
[ENA]
¡û
>W1910038656
BEIU01000006
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
207415
207489
+
Arg
CCG
[ENA]
¡û
>W1910038717
BEIV01000125
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
7911
7985
+
Arg
CCG
[ENA]
¡û
>W1910067349
BEYQ01000003
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
338841
338915
+
Arg
CCG
[ENA]
¡û
>W1910067386
BFAC01000001
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
145829
145755
-
Arg
CCG
[ENA]
¡û
>W1910142345
BIFY01000107
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
13117
13043
-
Arg
CCG
[ENA]
¡û
>W1910665575
MCIH01000115
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
4196
4122
-
Arg
CCG
[ENA]
¡û
>W1910665594
MCIH01000236
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
31124
31198
+
Arg
CCG
[ENA]
¡û
>W1910768697
MOLZ01000271
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
1036
1110
+
Arg
CCG
[ENA]
¡û
>C151079388
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
1148493
1148419
-
Arg
CCG
[Ensembl]
¡û
>C151080705
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
5136568
5136642
+
Arg
CCG
-
¡û
>W1510013626
BBPA01000032
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
25999
25925
-
Arg
CCG
[ENA]
¡û
>W1610550828
JXYX01000007
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
114568
114494
-
Arg
CCG
[ENA]
¡û
>W1710004747
AJHB01001523
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
1573
1647
+
Arg
CCG
[ENA]
¡û
>W1710005097
AJUS01001605
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
1897
1971
+
Arg
CCG
[ENA]
¡û
>W1710005134
AJUT01001501
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
1573
1647
+
Arg
CCG
[ENA]
¡û
>W1710005170
AJUU01001489
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
1897
1971
+
Arg
CCG
[ENA]
¡û
>W1710660705
JXYX01000007
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
114568
114494
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK