This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452091 (123 seq.)
>W1710882472
LMTZ01000114
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
6394
6322
-
Ala
GGC
[ENA]
¡û
>W1710882473
LMTZ01000115
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
82245
82317
+
Ala
GGC
[ENA]
¡û
>W1711377892
MDZH01000130
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
92305
92377
+
Ala
GGC
[ENA]
¡û
>W1711509553
MKZS01000001
Cyanobacteriota
Moorena bouillonii PNG5-198 [MKZS]
1932992
1933064
+
Ala
GGC
[ENA]
¡û
>W1711603011
MOLN01000001
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
88095
88023
-
Ala
GGC
[ENA]
¡û
>W1711666505
MRCA01000004
Cyanobacteriota
Fischerella major NIES-592 [MRCA]
259417
259490
+
Ala
GGC
[ENA]
¡û
>W1711666590
MRCC01000010
Cyanobacteriota
Chroogloeocystis siderophila 5.2 s.c.1 [MRCC]
80169
80241
+
Ala
GGC
[ENA]
¡û
>W1711666709
MRCF01000003
Cyanobacteriota
Scytonema sp. HK-05 [MRCF]
173289
173217
-
Ala
GGC
[ENA]
¡û
>W1711979750
NDGV01000019
Cyanobacteriota
cyanobacterium TDX16 [NDGV]
40172
40100
-
Ala
GGC
[ENA]
¡û
>C171016627
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
1099961
1100033
+
Ala
GGC
-
¡û
>C171064181
CP017599
Cyanobacteriota
Moorena producens PAL-8-15-08-1 [CP017599]
2124542
2124614
+
Ala
GGC
-
¡û
>C171097528
CP019636
Cyanobacteriota
Nostocales cyanobacterium HT-58-2 [CP019636]
302520
302592
+
Ala
GGC
-
¡û
>C171112071
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
4877673
4877601
-
Ala
GGC
-
¡û
>W131063391
ANKQ01000003
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
417706
417778
+
Ala
GGC
[ENA]
¡û
>W131087178
AOCI01000136
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
32490
32418
-
Ala
GGC
[ENA]
¡û
>W131166664
ARCP01000046
Cyanobacteriota
filamentous cyanobacterium ESFC-1 [ARCP]
72042
72114
+
Ala
GGC
[ENA]
¡û
>W131203776
ASZQ01000253
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
15250
15178
-
Ala
GGC
[ENA]
¡û
>W141021260
AJLJ01000190
Cyanobacteriota
Fischerella muscicola SAG 1427-1 = PCC 73103 [AJLJ]
34202
34130
-
Ala
GGC
[ENA]
¡û
>W141021287
AJLK01000012
Cyanobacteriota
Fischerella muscicola PCC 7414 [AJLK]
1790
1862
+
Ala
GGC
[ENA]
¡û
>W141021375
AJLL01000103
Cyanobacteriota
Fischerella thermalis PCC 7521 [AJLL]
11432
11359
-
Ala
GGC
[ENA]
¡û
>W141038375
ALVT01000009
Cyanobacteriota
Fischerella sp. PCC 9605 [ALVT]
51565
51639
+
Ala
GGC
[ENA]
¡û
>W141038529
ALVX01000034
Cyanobacteriota
Fischerella sp. PCC 9431 [ALVX]
128264
128192
-
Ala
GGC
[ENA]
¡û
>W141038549
ALVY01000183
Cyanobacteriota
Gloeocapsa sp. PCC 73106 [ALVY]
7357
7429
+
Ala
GGC
[ENA]
¡û
>W141065569
AQPY01000692
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
9739
9811
+
Ala
GGC
[ENA]
¡û
>WENV181411221
OGCI01016540
[OGCI] hot springs metagenome; Hot spring water
1299
1371
+
Ala
GGC
[ENA]
¢þ
>W141150866
AXAQ01000316
Cyanobacteriota
Mastigocoleus testarum BC008 [AXAQ]
908
836
-
Ala
GGC
[ENA]
¡û
>W141242377
CAIH01000242
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
9749
9821
+
Ala
GGC
[ENA]
¡û
>W141242406
CAII01000231
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
1559
1487
-
Ala
GGC
[ENA]
¡û
>W141242495
CAIK01000254
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
20909
20837
-
Ala
GGC
[ENA]
¡û
>W141242535
CAIL01000247
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
91385
91457
+
Ala
GGC
[ENA]
¡û
>W141242553
CAIM01000142
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
402
330
-
Ala
GGC
[ENA]
¡û
>W141242598
CAIN01000099
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
24552
24480
-
Ala
GGC
[ENA]
¡û
>W141242631
CAIO01000097
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
5022
5094
+
Ala
GGC
[ENA]
¡û
>W141242713
CAIQ01000079
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
8146
8074
-
Ala
GGC
[ENA]
¡û
>C08006357
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
4859421
4859493
+
Ala
GGC
[Ensembl]
¡û
>WENV183702702
PDVI01026258
[PDVI] alkali sediment metagenome; glacial lake sediment
300
228
-
Ala
GGC
[ENA]
¢þ
>WENV170680616
LFEF01003422
[LFEF] freshwater metagenome; waterbloom
86452
86524
+
Ala
GGC
[ENA]
¢þ
>C181046172
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
4163463
4163535
+
Ala
GGC
-
¡û
>C191007259
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
2731376
2731448
+
Ala
GGC
-
¡û
>W1910020353
BDSG01000051
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
27121
27193
+
Ala
GGC
[ENA]
¡û
>W1910020391
BDSM01000019
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
67493
67421
-
Ala
GGC
[ENA]
¡û
>W1910038677
BEIU01000024
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
21447
21375
-
Ala
GGC
[ENA]
¡û
>W1910038711
BEIV01000056
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
25157
25229
+
Ala
GGC
[ENA]
¡û
>W1910067348
BEYQ01000003
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
296815
296887
+
Ala
GGC
[ENA]
¡û
>W1910067384
BFAC01000001
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
506691
506619
-
Ala
GGC
[ENA]
¡û
>W1910142316
BIFY01000002
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
38891
38819
-
Ala
GGC
[ENA]
¡û
>W1910596181
LAGX01000011
Cyanobacteriota
Nostoc linckia z1 [LAGX]
192103
192175
+
Ala
GGC
[ENA]
¡û
>W1910596265
LAGY01000020
Cyanobacteriota
Nostoc linckia z2 [LAGY]
166022
166094
+
Ala
GGC
[ENA]
¡û
>W1910596369
LAGZ01000020
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
166145
166217
+
Ala
GGC
[ENA]
¡û
>W1910596414
LAHA01000001
Cyanobacteriota
Nostoc linckia z4 [LAHA]
486870
486942
+
Ala
GGC
[ENA]
¡û
>W1910596519
LAHB01000037
Cyanobacteriota
Nostoc linckia z6 [LAHB]
14865
14793
-
Ala
GGC
[ENA]
¡û
>W1910596586
LAHC01000027
Cyanobacteriota
Nostoc linckia z7 [LAHC]
14867
14795
-
Ala
GGC
[ENA]
¡û
>W1910596670
LAHD01000023
Cyanobacteriota
Nostoc linckia z8 [LAHD]
14866
14794
-
Ala
GGC
[ENA]
¡û
>W1910596789
LAHE01000053
Cyanobacteriota
Nostoc linckia z9 [LAHE]
14970
14898
-
Ala
GGC
[ENA]
¡û
>W1910596864
LAHF01000043
Cyanobacteriota
Nostoc linckia z13 [LAHF]
1085
1013
-
Ala
GGC
[ENA]
¡û
>W1910596928
LAHG01000033
Cyanobacteriota
Nostoc linckia z14 [LAHG]
872
800
-
Ala
GGC
[ENA]
¡û
>W1910597051
LAHH01000055
Cyanobacteriota
Nostoc linckia z15 [LAHH]
862
790
-
Ala
GGC
[ENA]
¡û
>W1910597102
LAHI01000042
Cyanobacteriota
Nostoc linckia z16 [LAHI]
14915
14843
-
Ala
GGC
[ENA]
¡û
>W1910597194
LAHJ01000035
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
843
771
-
Ala
GGC
[ENA]
¡û
>W1910665570
MCIH01000077
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
10601
10673
+
Ala
GGC
[ENA]
¡û
>W1910768685
MOLZ01000133
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
4983
4911
-
Ala
GGC
[ENA]
¡û
>W1910812557
MVDI01000009
Cyanobacteriota
Chroococcidiopsis sp. TS-821 [MVDI]
69587
69659
+
Ala
GGC
[ENA]
¡û
>W1910896843
NGAA01000043
Cyanobacteriota
Fischerella thermalis 111/344/542 [NGAA]
581
654
+
Ala
GGC
[ENA]
¡û
>W1910899177
NGJL01000058
Cyanobacteriota
Mastigocladus laminosus WC112 [NGJL]
1760
1687
-
Ala
GGC
[ENA]
¡û
>W1910909724
NGZS01000077
Cyanobacteriota
Fischerella thermalis WC1110 [NGZS]
641
714
+
Ala
GGC
[ENA]
¡û
>W1910909764
NGZT01000038
Cyanobacteriota
Fischerella thermalis WC119 [NGZT]
119550
119477
-
Ala
GGC
[ENA]
¡û
>W1910909824
NGZU01000070
Cyanobacteriota
Fischerella thermalis WC114 [NGZU]
235662
235589
-
Ala
GGC
[ENA]
¡û
>W1910909863
NGZV01000093
Cyanobacteriota
Fischerella thermalis WC157 [NGZV]
191961
191888
-
Ala
GGC
[ENA]
¡û
>W1910909908
NGZW01000194
Cyanobacteriota
Fischerella thermalis WC341 [NGZW]
641
714
+
Ala
GGC
[ENA]
¡û
>W1910909925
NGZX01000066
Cyanobacteriota
Fischerella thermalis WC559 [NGZX]
16041
15968
-
Ala
GGC
[ENA]
¡û
>W1910909970
NGZY01000061
Cyanobacteriota
Fischerella thermalis WC558 [NGZY]
50682
50609
-
Ala
GGC
[ENA]
¡û
>W1910910004
NGZZ01000064
Cyanobacteriota
Fischerella thermalis WC542 [NGZZ]
11656
11583
-
Ala
GGC
[ENA]
¡û
>W1910910053
NHAA01000103
Cyanobacteriota
Fischerella thermalis WC538 [NHAA]
187369
187296
-
Ala
GGC
[ENA]
¡û
>W1910910084
NHAB01000087
Cyanobacteriota
Fischerella thermalis WC527 [NHAB]
643
716
+
Ala
GGC
[ENA]
¡û
>W1910910113
NHAC01000030
Cyanobacteriota
Fischerella thermalis WC442 [NHAC]
601
674
+
Ala
GGC
[ENA]
¡û
>W1910910148
NHAD01000007
Cyanobacteriota
Fischerella thermalis WC441 [NHAD]
12838
12765
-
Ala
GGC
[ENA]
¡û
>W1910910217
NHAE01000171
Cyanobacteriota
Fischerella thermalis WC439 [NHAE]
639
712
+
Ala
GGC
[ENA]
¡û
>W1910910248
NHAF01000079
Cyanobacteriota
Fischerella thermalis WC344 [NHAF]
639
712
+
Ala
GGC
[ENA]
¡û
>W1910910280
NHAG01000037
Cyanobacteriota
Fischerella thermalis WC249 [NHAG]
34193
34120
-
Ala
GGC
[ENA]
¡û
>W1910910344
NHAH01000102
Cyanobacteriota
Fischerella thermalis WC246 [NHAH]
91831
91758
-
Ala
GGC
[ENA]
¡û
>W1910910348
NHAI01000020
Cyanobacteriota
Fischerella thermalis WC245 [NHAI]
942
1015
+
Ala
GGC
[ENA]
¡û
>W1910910393
NHAJ01000069
Cyanobacteriota
Fischerella thermalis WC217 [NHAJ]
11100
11027
-
Ala
GGC
[ENA]
¡û
>W1910910445
NHAK01000166
Cyanobacteriota
Fischerella thermalis WC213 [NHAK]
50953
51026
+
Ala
GGC
[ENA]
¡û
>W1911070679
NMQA01000270
Cyanobacteriota
Fischerella thermalis CCMEE 5268 [NMQA]
12704
12632
-
Ala
GGC
[ENA]
¡û
>W1911070716
NMQB01000404
Cyanobacteriota
Fischerella thermalis CCMEE 5273 [NMQB]
3071
2998
-
Ala
GGC
[ENA]
¡û
>W1911070757
NMQC01000142
Cyanobacteriota
Fischerella thermalis CCMEE 5282 [NMQC]
46520
46593
+
Ala
GGC
[ENA]
¡û
>W1911070781
NMQD01000176
Cyanobacteriota
Fischerella thermalis CCMEE 5319 [NMQD]
399
327
-
Ala
GGC
[ENA]
¡û
>W1911070835
NMQE01000152
Cyanobacteriota
Fischerella thermalis CCMEE 5318 [NMQE]
10262
10334
+
Ala
GGC
[ENA]
¡û
>W1911070893
NMQF01000446
Cyanobacteriota
Fischerella thermalis CCMEE 5198 [NMQF]
2541
2468
-
Ala
GGC
[ENA]
¡û
>W1911070940
NMQG01000233
Cyanobacteriota
Fischerella thermalis BR2B [NMQG]
48145
48072
-
Ala
GGC
[ENA]
¡û
>W1911070963
NMQH01000103
Cyanobacteriota
Fischerella thermalis CCMEE 5208 [NMQH]
1465
1538
+
Ala
GGC
[ENA]
¡û
>W1911071006
NMQI01000226
Cyanobacteriota
Fischerella thermalis CCMEE 5330 [NMQI]
22328
22401
+
Ala
GGC
[ENA]
¡û
>W1911071055
NMQJ01000459
Cyanobacteriota
Fischerella thermalis CCMEE 5205 [NMQJ]
1882
1954
+
Ala
GGC
[ENA]
¡û
>W1911071082
NMQK01000236
Cyanobacteriota
Fischerella thermalis CCMEE 5201 [NMQK]
8187
8115
-
Ala
GGC
[ENA]
¡û
>W1911178236
NQMD01001123
Cyanobacteriota
Fischerella thermalis CCMEE 5196 [NQMD]
2531
2458
-
Ala
GGC
[ENA]
¡û
>W1911178269
NQME01000355
Cyanobacteriota
Fischerella thermalis CCMEE 5194 [NQME]
3143
3070
-
Ala
GGC
[ENA]
¡û
>W1911178307
NQMF01000472
Cyanobacteriota
Fischerella thermalis CCMEE 5328 [NQMF]
3082
3009
-
Ala
GGC
[ENA]
¡û
>W1911218674
NRQW01000695
Cyanobacteriota
Fischerella muscicola CCMEE 5323 [NRQW]
19425
19497
+
Ala
GGC
[ENA]
¡û
>W1911638324
PVWL01000030
Cyanobacteriota
Cyanosarcina burmensis burmensis CCALA 770 [PVWL]
15918
15990
+
Ala
GGC
[ENA]
¡û
>W1911638369
PVWM01000209
Cyanobacteriota
Chroococcidiopsis cubana CCALA 043 [PVWM]
1174
1102
-
Ala
GGC
[ENA]
¡û
>W1911641157
PYCI01000001
Cyanobacteriota
Chroococcidiopsis sp. CCALA 051 [PYCI]
20885
20813
-
Ala
GGC
[ENA]
¡û
>W1911741971
QVFW01000001
Cyanobacteriota
Scytonema millei VB511283 [QVFW]
483772
483700
-
Ala
GGC
[ENA]
¡û
>W1810076217
PEIG01000014
Cyanobacteriota
Gloeocapsopsis sp. IPPAS B-1203 IPPAS B-1203 [PEIG]
21025
20953
-
Ala
GGC
[ENA]
¡û
>W1810296713
PTJN01000060
Cyanobacteriota
Gloeocapsopsis dulcis AAB1 [PTJN]
11218
11290
+
Ala
GGC
[ENA]
¡û
>C151079358
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
1101651
1101723
+
Ala
GGC
[Ensembl]
¡û
>C151080723
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
1298648
1298576
-
Ala
GGC
-
¡û
>W1510013622
BBPA01000024
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
1752
1680
-
Ala
GGC
[ENA]
¡û
>W1511401811
JTJC01000086
Cyanobacteriota
Scytonema millei VB511283 [JTJC]
496128
496056
-
Ala
GGC
[ENA]
¡û
>W1511501648
JXCA01000005
Cyanobacteriota
Scytonema tolypothrichoides VB-61278 [JXCA]
344120
344192
+
Ala
GGC
[ENA]
¡û
>W1511501719
JXCB01000008
Cyanobacteriota
Tolypothrix campylonemoides VB511288 [JXCB]
302607
302679
+
Ala
GGC
[ENA]
¡û
>W11181290
AGIZ01000006
Cyanobacteriota
Fischerella thermalis JSC-11 [AGIZ]
278974
279047
+
Ala
GGC
[ENA]
¡û
>C161002633
AP017305
Cyanobacteriota
Fischerella sp. NIES-3754 [AP017305]
4095624
4095551
-
Ala
GGC
[Ensembl]
¡û
>C131004544
CP003597
Cyanobacteriota
Chroococcidiopsis thermalis PCC 7203 [CP003597]
472064
471992
-
Ala
GGC
[Ensembl]
¡û
>C131004875
CP003630
Cyanobacteriota
Allocoleopsis franciscana PCC 7113 [CP003630]
3423819
3423891
+
Ala
GGC
[Ensembl]
¡û
>C131004979
CP003646
Cyanobacteriota
Gloeocapsa sp. PCC 7428 [CP003646]
4708062
4708134
+
Ala
GGC
[Ensembl]
¡û
>W1610550812
JXYX01000001
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
1088568
1088496
-
Ala
GGC
[ENA]
¡û
>W1610744398
LMTZ01000114
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
6394
6322
-
Ala
GGC
[ENA]
¡û
>W1610744399
LMTZ01000115
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
82245
82317
+
Ala
GGC
[ENA]
¡û
>W1710004748
AJHB01001603
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
437
509
+
Ala
GGC
[ENA]
¡û
>W1710005098
AJUS01001688
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
439
511
+
Ala
GGC
[ENA]
¡û
>W1710005135
AJUT01001583
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
2588
2660
+
Ala
GGC
[ENA]
¡û
>W1710005171
AJUU01001567
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
438
510
+
Ala
GGC
[ENA]
¡û
>W1710660689
JXYX01000001
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
1088568
1088496
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK