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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452093 (43 seq.)
>W131063362
ANKQ01000001
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
1473013
1472939
-
Arg
TCT
[ENA]
¡û
>W131087188
AOCI01000184
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
36885
36811
-
Arg
TCT
[ENA]
¡û
>W131203786
ASZQ01000265
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
61392
61318
-
Arg
TCT
[ENA]
¡û
>W1711377910
MDZH01000294
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
5770
5844
+
Arg
TCT
[ENA]
¡û
>W1711603030
MOLN01000077
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
15503
15429
-
Arg
TCT
[ENA]
¡û
>W1711772025
MVGR01000004
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
1621359
1621433
+
Arg
TCT
[ENA]
¡û
>C171016639
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
3283114
3283188
+
Arg
TCT
-
¡û
>C171112063
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
2875784
2875858
+
Arg
TCT
-
¡û
>WENV180111397
OAPN01073651
[OAPN] marine metagenome; 2011
211
285
+
Arg
TCT
[ENA]
¢þ
>W141065573
AQPY01000707
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
1293
1219
-
Arg
TCT
[ENA]
¡û
>W141242372
CAIH01000179
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
7114
7188
+
Arg
TCT
[ENA]
¡û
>W141242394
CAII01000009
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
373
299
-
Arg
TCT
[ENA]
¡û
>W141242452
CAIJ01000285
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
216
142
-
Arg
TCT
[ENA]
¡û
>W141242490
CAIK01000211
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
41994
41920
-
Arg
TCT
[ENA]
¡û
>W141242519
CAIL01000064
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
11585
11659
+
Arg
TCT
[ENA]
¡û
>W141242555
CAIM01000179
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
380
306
-
Arg
TCT
[ENA]
¡û
>W141242612
CAIN01000224
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
15401
15327
-
Arg
TCT
[ENA]
¡û
>W141242650
CAIO01000362
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
17264
17338
+
Arg
TCT
[ENA]
¡û
>W141242685
CAIP01000192
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
16005
15931
-
Arg
TCT
[ENA]
¡û
>W141242709
CAIQ01000042
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
5160
5086
-
Arg
TCT
[ENA]
¡û
>C08006349
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
3131090
3131164
+
Arg
TCT
[Ensembl]
¡û
>WENV182866037
OKRQ01014116
[OKRQ] freshwater metagenome; freshwater
573
647
+
Arg
TCT
[ENA]
¢þ
>WENV170681019
LFEF01044014
[LFEF] freshwater metagenome; waterbloom
8461
8387
-
Arg
TCT
[ENA]
¢þ
>C181046190
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
770094
770020
-
Arg
TCT
-
¡û
>C191007252
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
1040986
1041060
+
Arg
TCT
-
¡û
>W1910020347
BDSG01000035
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
39638
39712
+
Arg
TCT
[ENA]
¡û
>W1910020380
BDSM01000003
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
8706
8632
-
Arg
TCT
[ENA]
¡û
>W1910038674
BEIU01000020
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
86547
86473
-
Arg
TCT
[ENA]
¡û
>W1910038698
BEIV01000028
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
34768
34842
+
Arg
TCT
[ENA]
¡û
>W1910067345
BEYQ01000001
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
415093
415019
-
Arg
TCT
[ENA]
¡û
>W1910067397
BFAC01000004
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
326916
326842
-
Arg
TCT
[ENA]
¡û
>W1910142321
BIFY01000014
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
20026
20100
+
Arg
TCT
[ENA]
¡û
>W1910665592
MCIH01000228
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
43902
43976
+
Arg
TCT
[ENA]
¡û
>W1910768682
MOLZ01000104
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
4635
4561
-
Arg
TCT
[ENA]
¡û
>C151079370
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
3285098
3285172
+
Arg
TCT
[Ensembl]
¡û
>C151080694
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
2721191
2721265
+
Arg
TCT
-
¡û
>W1510013644
BBPA01000073
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
66778
66852
+
Arg
TCT
[ENA]
¡û
>W1610550832
JXYX01000008
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
208037
207963
-
Arg
TCT
[ENA]
¡û
>W1710004738
AJHB01001014
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
1348
1422
+
Arg
TCT
[ENA]
¡û
>W1710005087
AJUS01001071
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
1843
1917
+
Arg
TCT
[ENA]
¡û
>W1710005124
AJUT01001004
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
1350
1424
+
Arg
TCT
[ENA]
¡û
>W1710005160
AJUU01000998
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
1350
1424
+
Arg
TCT
[ENA]
¡û
>W1710660709
JXYX01000008
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
208037
207963
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK