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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452093 (17 seq.)
>WENV180069395
MPLZ02105703
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
2812
2739
-
Cys
GCA
[ENA]
¡û
>WENV180072330
MPMA02013687
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
1938
2011
+
Cys
GCA
[ENA]
¡û
>WENV180072924
MPMA02050257
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
26301
26374
+
Cys
GCA
[ENA]
¡û
>WENV180073295
MPMA02071945
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
1130
1203
+
Cys
GCA
[ENA]
¡û
>WENV180076523
MPMB02001799
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
7392
7465
+
Cys
GCA
[ENA]
¡û
>WENV180078537
MPMB02111561
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
11181
11254
+
Cys
GCA
[ENA]
¡û
>WENV180080280
MPMB02218510
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
13
86
+
Cys
GCA
[ENA]
¡û
>WENV183626925
OOGK01011505
[OOGK] marine metagenome; seawater
504
577
+
Cys
GCA
[ENA]
¡û
>WENV170383190
CETX01082951
[CETX] marine metagenome genome assembly TARA_138_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
539
466
-
Cys
GCA
[ENA]
¡û
>WENV170610239
FUWD011781186
[FUWD] metagenome; unknown
150
223
+
Cys
GCA
[ENA]
¡û
>WENV170874583
MDTC01007507
[MDTC] marine metagenome; seawater
2566
2493
-
Cys
GCA
[ENA]
¡û
>W2110562764
JAGMWN010000001
Alphaproteobacteria
Marivibrio halodurans CGMCC 1.15697 [JAGMWN]
338544
338617
+
Cys
GCA
[ENA]
¡û
>C211030996
CP018227
Alphaproteobacteria
Kordiimonadales bacterium IMCC3096 [CP018227]
187209
187282
+
Cys
GCA
-
¡û
>C241250143
CP123781
Alphaproteobacteria
Minwuia sp. IMCC3009 [CP123781]
2257452
2257525
+
Cys
GCA
-
¡û
>C241250190
CP123782
Alphaproteobacteria
Minwuia sp. IMCC3060 [CP123782]
2283158
2283231
+
Cys
GCA
-
¡û
>C241250264
CP123783
Alphaproteobacteria
Minwuia sp. IMCC3077 [CP123783]
3100308
3100235
-
Cys
GCA
-
¡û
>C241250288
CP123784
Alphaproteobacteria
Minwuia sp. IMCC4030 [CP123784]
3222296
3222369
+
Cys
GCA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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