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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452094 (44 seq.)
>W1711377897
MDZH01000160
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
124727
124799
+
Phe
GAA
[ENA]
¡û
>W131063361
ANKQ01000001
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
1747502
1747574
+
Phe
GAA
[ENA]
¡û
>W131087161
AOCI01000028
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
35636
35708
+
Phe
GAA
[ENA]
¡û
>W131203759
ASZQ01000153
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
17285
17360
+
Phe
GAA
[ENA]
¡û
>W1711603020
MOLN01000019
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
6469
6397
-
Phe
GAA
[ENA]
¡û
>W1711772044
MVGR01000005
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
1097401
1097329
-
Phe
GAA
[ENA]
¡û
>C171016640
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
3434263
3434335
+
Phe
GAA
-
¡û
>C171112074
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
4484407
4484335
-
Phe
GAA
-
¡û
>WENV180110829
OAPN01008811
[OAPN] marine metagenome; 2011
719
791
+
Phe
GAA
[ENA]
¢þ
>W141065558
AQPY01000217
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
8476
8548
+
Phe
GAA
[ENA]
¡û
>W141242363
CAIH01000105
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
12112
12040
-
Phe
GAA
[ENA]
¡û
>W141242405
CAII01000205
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
6910
6982
+
Phe
GAA
[ENA]
¡û
>W141242460
CAIJ01000498
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
11150
11078
-
Phe
GAA
[ENA]
¡û
>W141242488
CAIK01000182
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
20259
20331
+
Phe
GAA
[ENA]
¡û
>W141242536
CAIL01000251
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
37332
37404
+
Phe
GAA
[ENA]
¡û
>W141242565
CAIM01000334
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
19604
19532
-
Phe
GAA
[ENA]
¡û
>W141242623
CAIN01000443
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
20561
20633
+
Phe
GAA
[ENA]
¡û
>W141242646
CAIO01000290
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
18334
18262
-
Phe
GAA
[ENA]
¡û
>W141242688
CAIP01000199
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
8083
8011
-
Phe
GAA
[ENA]
¡û
>W141242725
CAIQ01000246
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
2701
2629
-
Phe
GAA
[ENA]
¡û
>C08006355
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
4410539
4410611
+
Phe
GAA
[Ensembl]
¡û
>WENV182866262
OKRQ01043269
[OKRQ] freshwater metagenome; freshwater
150
222
+
Phe
GAA
[ENA]
¢þ
>WENV170680699
LFEF01011400
[LFEF] freshwater metagenome; waterbloom
52561
52489
-
Phe
GAA
[ENA]
¢þ
>C181046189
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
868312
868240
-
Phe
GAA
-
¡û
>C191007257
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
2284199
2284271
+
Phe
GAA
-
¡û
>W1910020349
BDSG01000038
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
20739
20667
-
Phe
GAA
[ENA]
¡û
>W1910020412
BDSM01000053
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
56142
56214
+
Phe
GAA
[ENA]
¡û
>W1910038669
BEIU01000013
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
130252
130324
+
Phe
GAA
[ENA]
¡û
>W1910038710
BEIV01000053
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
22233
22305
+
Phe
GAA
[ENA]
¡û
>W1910067369
BEYQ01000011
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
72768
72696
-
Phe
GAA
[ENA]
¡û
>W1910067418
BFAC01000027
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
6878
6950
+
Phe
GAA
[ENA]
¡û
>W1910142326
BIFY01000027
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
6061
5989
-
Phe
GAA
[ENA]
¡û
>W1910665579
MCIH01000180
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
13030
12958
-
Phe
GAA
[ENA]
¡û
>W1910665597
MCIH01000247
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
21871
21799
-
Phe
GAA
[ENA]
¡û
>W1910768677
MOLZ01000086
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
4255
4183
-
Phe
GAA
[ENA]
¡û
>C151079371
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
3436137
3436209
+
Phe
GAA
[Ensembl]
¡û
>C151080695
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
2942770
2942842
+
Phe
GAA
-
¡û
>W1510013635
BBPA01000053
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
126548
126476
-
Phe
GAA
[ENA]
¡û
>W1610550807
JXYX01000001
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
1356241
1356316
+
Phe
GAA
[ENA]
¡û
>W1710004744
AJHB01001449
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
2556
2628
+
Phe
GAA
[ENA]
¡û
>W1710005094
AJUS01001528
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
2626
2698
+
Phe
GAA
[ENA]
¡û
>W1710005131
AJUT01001428
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
2582
2654
+
Phe
GAA
[ENA]
¡û
>W1710005167
AJUU01001415
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
2598
2670
+
Phe
GAA
[ENA]
¡û
>W1710660684
JXYX01000001
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
1356241
1356316
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK