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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452358 (60 seq.)
>W1710944413
LOQS01000038
Actinomycetota
Corynebacterium glutamicum [LOQS]
83718
83645
-
Arg
CCG
[ENA]
¡û
>W1710944442
LOQT01000018
Actinomycetota
Corynebacterium glutamicum [LOQT]
97017
97090
+
Arg
CCG
[ENA]
¡û
>W1710944491
LOQV01000013
Actinomycetota
Corynebacterium glutamicum [LOQV]
15860
15933
+
Arg
CCG
[ENA]
¡û
>W1710944561
LOQW01000013
Actinomycetota
Corynebacterium glutamicum [LOQW]
97015
97088
+
Arg
CCG
[ENA]
¡û
>W1710944628
LOQX01000021
Actinomycetota
Corynebacterium glutamicum [LOQX]
38129
38056
-
Arg
CCG
[ENA]
¡û
>W1710944670
LOQY01000042
Actinomycetota
Corynebacterium glutamicum [LOQY]
90399
90326
-
Arg
CCG
[ENA]
¡û
>W1711114807
LTZP01000092
Actinomycetota
Corynebacterium sp. HMSC11E11 [LTZP]
25174
25249
+
Arg
CCG
[ENA]
¡û
>C171111088
CP020658
Actinomycetota
Corynebacterium glutamicum TQ2223 [CP020658]
1496162
1496235
+
Arg
CCG
-
¡û
>W131156377
AQPS01000011
Actinomycetota
Corynebacterium glutamicum MT [AQPS]
38003
37930
-
Arg
CCG
[ENA]
¡û
>W131215672
ATVF01000002
Actinomycetota
Corynebacterium callunae DSM 20147 [ATVF]
223556
223629
+
Arg
CCG
[ENA]
¡û
>W131219770
ATYV01000005
Actinomycetota
Corynebacterium sputi DSM 45148 [ATYV]
77168
77093
-
Arg
CCG
[ENA]
¡û
>C005570
BA000035
Actinomycetota
Corynebacterium efficiens YS-314 [BA000035]
1334786
1334714
-
Arg
CCG
[Ensembl]
¡û
>C005710
BA000036
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [BA000036]
1236468
1236396
-
Arg
CCG
[Ensembl]
¡û
>C005770
BX927147
Actinomycetota
Corynebacterium glutamicum [BX927147]
1237936
1237864
-
Arg
CCG
[Ensembl]
¡û
>C005828
AP009044
Actinomycetota
Corynebacterium glutamicum R [AP009044]
1379113
1379041
-
Arg
CCG
[Ensembl]
¡û
>W141026586
AKXP01000018
Actinomycetota
Corynebacterium glutamicum Z188 [AKXP]
83554
83481
-
Arg
CCG
[ENA]
¡û
>WENV170686770
LFRM01163005
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
5728
5653
-
Arg
CCG
[ENA]
¢þ
>WENV170725908
LSQX01360434
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1907
1982
+
Arg
CCG
[ENA]
¢þ
>C181001637
AP017369
Actinomycetota
Corynebacterium suranareeae N24 [AP017369]
1386925
1386852
-
Arg
CCG
-
¡û
>C181002251
AP017557
Actinomycetota
Corynebacterium glutamicum AJ1511 [AP017557]
1340232
1340159
-
Arg
CCG
-
¡û
>C181029659
CP017995
Actinomycetota
Corynebacterium glutamicum C1 [CP017995]
1081548
1081475
-
Arg
CCG
-
¡û
>C181064203
CP022394
Actinomycetota
Corynebacterium glutamicum WM001 [CP022394]
889238
889165
-
Arg
CCG
-
¡û
>C181070002
CP022614
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [CP022614]
1311522
1311449
-
Arg
CCG
-
¡û
>C181118460
CP025533
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [CP025533]
1238200
1238127
-
Arg
CCG
-
¡û
>C181118509
CP025534
Actinomycetota
Corynebacterium glutamicum HA [CP025534]
2017615
2017542
-
Arg
CCG
-
¡û
>C191094621
CP032788
Actinomycetota
Corynebacterium xerosis GS 1 [CP032788]
1095866
1095793
-
Arg
CCG
-
¡û
>W09127884
ACLI01000041
Actinomycetota
Corynebacterium efficiens YS-314 [ACLI]
28579
28506
-
Arg
CCG
[ENA]
¡û
>W141800899
JPDH01000041
Actinomycetota
Corynebacterium glutamicum crenatum [JPDH]
3995
4068
+
Arg
CCG
[ENA]
¡û
>W1910001235
APJJ01000015
Actinomycetota
Corynebacterium glutamicum ZL-2 [APJJ]
163645
163572
-
Arg
CCG
[ENA]
¡û
>W1910374193
FUIB01000021
Actinomycetota
Corynebacterium glutamicum B Co 03.31 [FUIB]
129265
129338
+
Arg
CCG
[ENA]
¡û
>C141004175
CP005959
Actinomycetota
Corynebacterium glutamicum MB001 [CP005959]
1239364
1239291
-
Arg
CCG
[Ensembl]
¡û
>W1910438326
FWCI01000016
Actinomycetota
Corynebacterium pacaense Marseille-P2417 [FWCI]
221129
221202
+
Arg
CCG
[ENA]
¡û
>W1910573022
JOLA01000019
Actinomycetota
Corynebacterium glutamicum 1006 [JOLA]
50762
50835
+
Arg
CCG
[ENA]
¡û
>W1911596500
PNHF01000006
Actinomycetota
Corynebacterium xerosis UMB0908 [PNHF]
79682
79609
-
Arg
CCG
[ENA]
¡û
>C151033030
CP007722
Actinomycetota
Corynebacterium glutamicum ATCC 21831 [CP007722]
1316394
1316321
-
Arg
CCG
[Ensembl]
¡û
>C151033087
CP007724
Actinomycetota
Corynebacterium glutamicum AR1 [CP007724]
1285577
1285504
-
Arg
CCG
[Ensembl]
¡û
>C151045709
CP009220
Actinomycetota
Corynebacterium deserti GIMN1.010 [CP009220]
1175278
1175205
-
Arg
CCG
-
¡û
>C151069926
CP010451
Actinomycetota
Corynebacterium glutamicum B253 [CP010451]
1307988
1307915
-
Arg
CCG
[Ensembl]
¡û
>C151079637
CP011309
Actinomycetota
[Brevibacterium] flavum ATCC 15168 [CP011309]
1318687
1318614
-
Arg
CCG
[Ensembl]
¡û
>W1511351380
JRNE01000079
Actinomycetota
Corynebacterium freneyi DNF00450 [JRNE]
39654
39729
+
Arg
CCG
[ENA]
¡û
>W1511461073
JVMD01000020
Actinomycetota
Corynebacterium halotolerans 307_CHAL [JVMD]
73524
73449
-
Arg
CCG
[ENA]
¡û
>W1511500685
JXBH01000015
Actinomycetota
Corynebacterium glutamicum SYPS-062 [JXBH]
38161
38088
-
Arg
CCG
[ENA]
¡û
>W1511524443
JYEG01000003
Actinomycetota
Corynebacterium glutamicum SYPS-062-33a [JYEG]
38171
38098
-
Arg
CCG
[ENA]
¡û
>W1511585649
LAYS01000103
Actinomycetota
Corynebacterium xerosis ATCC 373 [LAYS]
91328
91253
-
Arg
CCG
[ENA]
¡û
>W11176871
AFYA01000005
Actinomycetota
Corynebacterium glutamicum S9114 [AFYA]
96981
97054
+
Arg
CCG
[ENA]
¡û
>C161003073
CP004046
Actinomycetota
[Brevibacterium] flavum ZL-1 [CP004046]
1357117
1357042
-
Arg
CCG
-
¡û
>C161003132
CP004062
Actinomycetota
Corynebacterium glutamicum ZL-6 [CP004062]
1355865
1355790
-
Arg
CCG
-
¡û
>C161040476
CP012194
Actinomycetota
Corynebacterium glutamicum CP [CP012194]
1379371
1379296
-
Arg
CCG
-
¡û
>C161063686
CP013991
Actinomycetota
Corynebacterium glutamicum USDA-ARS-USMARC-56828 [CP013991]
1339134
1339061
-
Arg
CCG
[Ensembl]
¡û
>C161081165
CP014984
Actinomycetota
Corynebacterium glutamicum YI [CP014984]
1310897
1310824
-
Arg
CCG
-
¡û
>C161089905
CP015622
Actinomycetota
Corynebacterium crudilactis JZ16 [CP015622]
1196131
1196058
-
Arg
CCG
[Ensembl]
¡û
>C161096104
CP016335
Actinomycetota
Corynebacterium glutamicum ATCC 13869 [CP016335]
1338562
1338487
-
Arg
CCG
-
¡û
>W121016275
AGQQ01000024
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [AGQQ]
38115
38042
-
Arg
CCG
[ENA]
¡û
>W1610068190
BCRD01000002
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
523554
523629
+
Arg
CCG
[ENA]
¡û
>C131012058
CP004047
Actinomycetota
Corynebacterium glutamicum SCgG1 [CP004047]
1428266
1428193
-
Arg
CCG
[Ensembl]
¡û
>C131012118
CP004048
Actinomycetota
Corynebacterium glutamicum SCgG2 [CP004048]
1428265
1428192
-
Arg
CCG
[Ensembl]
¡û
>C131013507
CP004354
Actinomycetota
Corynebacterium callunae DSM 20147 [CP004354]
1169161
1169088
-
Arg
CCG
[Ensembl]
¡û
>C131019783
HE802067
Actinomycetota
Corynebacterium glutamicum K051 ATCC 13032 [HE802067]
1236467
1236394
-
Arg
CCG
[Ensembl]
¡û
>W1710039856
BAYH01000017
Actinomycetota
Corynebacterium glutamicum [BAYH]
24078
24005
-
Arg
CCG
[ENA]
¡û
>W1710065563
BCRD01000002
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
523554
523629
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK