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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452394 (32 seq.)
>WENV180097845
MTBK01214229
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
147
222
+
Ala
TGC
[ENA]
¢þ
>WENV180620556
OCQB01121390
[OCQB] human gut metagenome; human gut
392
317
-
Ala
TGC
[ENA]
¢þ
>WENV180715455
ODFW01009109
[ODFW] human metagenome; G_DNA_Stool
2104
2029
-
Ala
TGC
[ENA]
¢þ
>WENV180761494
ODHZ01013031
[ODHZ] human metagenome; G_DNA_Stool
649
724
+
Ala
TGC
[ENA]
¢þ
>WENV180828581
ODKA01014312
[ODKA] human metagenome; G_DNA_Stool
78
153
+
Ala
TGC
[ENA]
¢þ
>WENV180850986
ODKV01019229
[ODKV] human metagenome; G_DNA_Stool
228
303
+
Ala
TGC
[ENA]
¢þ
>WENV180997581
ODVS01042153
[ODVS] human metagenome; G_DNA_Stool
66
141
+
Ala
TGC
[ENA]
¢þ
>WENV181037409
ODXP01052671
[ODXP] human metagenome; G_DNA_Stool
125
50
-
Ala
TGC
[ENA]
¢þ
>WENV181119378
OEFH01204702
[OEFH] human metagenome; G_DNA_Stool
78
153
+
Ala
TGC
[ENA]
¢þ
>WENV181713628
OGPQ01061328
[OGPQ] human gut metagenome; faeces
454
379
-
Ala
TGC
[ENA]
¢þ
>WENV183129261
OLNZ01076321
[OLNZ] human gut metagenome; faeces
715
640
-
Ala
TGC
[ENA]
¢þ
>WENV183334682
OLWF01005745
[OLWF] human gut metagenome; feces
2239
2164
-
Ala
TGC
[ENA]
¢þ
>WENV183349046
OLWV01016999
[OLWV] human gut metagenome; feces
843
768
-
Ala
TGC
[ENA]
¢þ
>WENV183747783
PPCM01037785
[PPCM] marine sediment metagenome; marine sediment
149
223
+
Ala
TGC
[ENA]
¢þ
>WENV183779707
PPYF01147384
[PPYF] human gut metagenome; stool from patient with Crohn's disease
243
318
+
Ala
TGC
[ENA]
¢þ
>WENV170563053
CZCB01009215
[CZCB] anaerobic digester metagenome; anaerobic digester
2019
1944
-
Ala
TGC
[ENA]
¢þ
>WENV170563715
CZCB01026240
[CZCB] anaerobic digester metagenome; anaerobic digester
1481
1406
-
Ala
TGC
[ENA]
¢þ
>WENV170635506
JDSF01036932
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
206
133
-
Ala
TGC
[ENA]
¢þ
>WENV170724128
LSQX01294381
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
826
901
+
Ala
TGC
[ENA]
¢þ
>WENV170970008
MTKW01048754
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1
76
+
Ala
TGC
[ENA]
¢þ
>C181054353
CP021850
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5807 [CP021850]
1097138
1097213
+
Ala
TGC
-
¡û
>W141619905
JJMM01000009
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
6385
6310
-
Ala
TGC
[ENA]
¡û
>W141619971
JJMM01000023
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
2772
2697
-
Ala
TGC
[ENA]
¡û
>W141619977
JJMM01000025
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
416
341
-
Ala
TGC
[ENA]
¡û
>W141733828
JNLE01000003
Bacillota
Clostridium sp. KNHs205 [JNLE]
599294
599367
+
Ala
TGC
[ENA]
¡û
>W1910927523
NIOI01000002
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5809 [NIOI]
630630
630705
+
Ala
TGC
[ENA]
¡û
>W1910927595
NIOJ01000185
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5806 [NIOJ]
152
77
-
Ala
TGC
[ENA]
¡û
>W1910927652
NIOK01000189
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5808 [NIOK]
152
77
-
Ala
TGC
[ENA]
¡û
>C151024042
CP007452
Bacillota
Peptoclostridium acidaminophilum DSM 3953 [CP007452]
13453
13528
+
Ala
TGC
[Ensembl]
¡û
>C151024045
CP007452
Bacillota
Peptoclostridium acidaminophilum DSM 3953 [CP007452]
50252
50327
+
Ala
TGC
[Ensembl]
¡û
>C151024068
CP007452
Bacillota
Peptoclostridium acidaminophilum DSM 3953 [CP007452]
189912
189987
+
Ala
TGC
[Ensembl]
¡û
>C151024091
CP007452
Bacillota
Peptoclostridium acidaminophilum DSM 3953 [CP007452]
197015
197090
+
Ala
TGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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