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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452410 (45 seq.)
>W1711168233
LVXG01000004
Bacteroidota
Niastella yeongjuensis [LVXG]
48339
48410
+
Trp
CCA
[ENA]
¡û
>W1711168541
LVYD01000054
Bacteroidota
Niastella vici [LVYD]
132905
132834
-
Trp
CCA
[ENA]
¡û
>W1711171932
LWBO01000018
Bacteroidota
Niastella koreensis [LWBO]
49640
49567
-
Trp
CCA
[ENA]
¡û
>W1711171979
LWBP01000204
Bacteroidota
Niastella populi [LWBP]
9215
9288
+
Trp
CCA
[ENA]
¡û
>W1711502866
MKTC01000014
Bacteroidota
Bacteroidetes bacterium 37-13 [MKTC]
13007
13078
+
Trp
CCA
[ENA]
¡û
>WENV180209706
OBAL01014982
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
470
541
+
Trp
CCA
[ENA]
¡û
>WENV180388186
OBPG01079493
[OBPG] marine metagenome; Sterile flask
370
299
-
Trp
CCA
[ENA]
¡û
>WENV180691584
OCZS010158735
[OCZS] soil metagenome; soil
528
599
+
Trp
CCA
[ENA]
¡û
>WENV181368908
OFQN01003280
[OFQN] freshwater metagenome; Freshwater Lake
1426
1497
+
Trp
CCA
[ENA]
¡û
>WENV181402030
OFTY01000045
[OFTY] sludge metagenome; sludge
15883
15812
-
Trp
CCA
[ENA]
¡û
>WENV181402218
OFTY01000257
[OFTY] sludge metagenome; sludge
17550
17479
-
Trp
CCA
[ENA]
¡û
>WENV181846183
OGVX01024904
[OGVX] freshwater metagenome; freshwater
635
706
+
Trp
CCA
[ENA]
¡û
>WENV181853522
OGWI01011190
[OGWI] freshwater metagenome; freshwater
415
344
-
Trp
CCA
[ENA]
¡û
>WENV170650116
JRYD01012159
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
1018
1091
+
Trp
CCA
[ENA]
¡û
>WENV170955392
MJUJ01049385
[MJUJ] soil metagenome; viral particles from soil sample CN
1297
1224
-
Trp
CCA
[ENA]
¡û
>WENV170995342
MWWF01001361
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
3445
3372
-
Trp
CCA
[ENA]
¡û
>WENV170995727
MWWF01044005
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
481
554
+
Trp
CCA
[ENA]
¡û
>WENV170996198
MWWF01173867
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
299
372
+
Trp
CCA
[ENA]
¡û
>WENV170998266
MWWJ01001145
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
2745
2674
-
Trp
CCA
[ENA]
¡û
>WENV170998841
MWWJ01123819
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
300
373
+
Trp
CCA
[ENA]
¡û
>W09108606
ABTK01000001
Bacteroidota
Chitinophaga pinensis DSM 2588 [ABTK]
2312011
2311938
-
Trp
CCA
[ENA]
¡û
>W1810543348
QDKG01000001
Bacteroidota
Sphingobacterium corticibacter 2c-3 [QDKG]
179797
179868
+
Trp
CCA
[ENA]
¡û
>W2010102918
BJXH01000020
Bacteroidota
Sphingobacterium mizutaii NBRC 14946 = DSM 11724 [BJXH]
48875
48804
-
Trp
CCA
[ENA]
¡û
>W2010751933
JACLGR010000001
Bacteroidota
Sphingobacterium mizutaii SM3 [JACLGR]
559929
559858
-
Trp
CCA
[ENA]
¡û
>W2011402459
RCSU01000003
Bacteroidota
Pseudoflavitalea rhizosphaerae KACC 18655 [RCSU]
242892
242821
-
Trp
CCA
[ENA]
¡û
>W2011404250
RCWL01000007
Bacteroidota
Chitinophagaceae bacterium HBUM179779 [RCWL]
181859
181930
+
Trp
CCA
[ENA]
¡û
>W2011578088
SGXA01000003
Bacteroidota
Pseudobacter ginsenosidimutans DSM 18116 [SGXA]
415941
416012
+
Trp
CCA
[ENA]
¡û
>W2011624554
SLYK01000011
Bacteroidota
Niastella sp. CF465 [SLYK]
66435
66506
+
Trp
CCA
[ENA]
¡û
>W2011694140
STFF01000010
Bacteroidota
Niastella sp. HX-16-21 [STFF]
73016
73087
+
Trp
CCA
[ENA]
¡û
>W2011752442
SZQL01000007
Bacteroidota
Panacibacter sp. 17mud1-8 [SZQL]
42978
43049
+
Trp
CCA
[ENA]
¡û
>W2012103447
VOHS01000005
Bacteroidota
Chitinophaga pinensis YS-16 [VOHS]
157976
157905
-
Trp
CCA
[ENA]
¡û
>W2012208576
VYQF01000001
Bacteroidota
Chitinophagaceae bacterium BR5-29 [VYQF]
1357625
1357554
-
Trp
CCA
[ENA]
¡û
>W2012373576
WLYS01000004
Bacteroidota
Sphingobacterium sp. IMCC25678 [WLYS]
317901
317830
-
Trp
CCA
[ENA]
¡û
>W2012429514
WSPZ01000017
Bacteroidota
Sphingobacterium sp. DK4209 [WSPZ]
46705
46776
+
Trp
CCA
[ENA]
¡û
>W2110546617
JAGHKO010000006
Bacteroidota
Niastella sp. MAH-29 [JAGHKO]
81539
81611
+
Trp
CCA
[ENA]
¡û
>W2110668884
JAICCF010000001
Bacteroidota
Chitinophaga sp. B61 [JAICCF]
2062108
2062037
-
Trp
CCA
[ENA]
¡û
>C201046901
CP030848
Bacteroidota
Sphingobacterium hotanense AMCC101218 [CP030848]
3680808
3680737
-
Trp
CCA
-
¡û
>C201163042
CP045652
Bacteroidota
Sphingobacterium sp. dk4302 [CP045652]
811746
811817
+
Trp
CCA
-
¡û
>C201212199
CP048113
Bacteroidota
Chitinophaga sp. H33E-04 [CP048113]
5943756
5943827
+
Trp
CCA
-
¡û
>C241065920
CP042431
Bacteroidota
Pseudobacter ginsenosidimutans Gsoil 221 [CP042431]
80657
80586
-
Trp
CCA
-
¡û
>C10103729
CP001699
Bacteroidota
Chitinophaga pinensis DSM 2588 [CP001699]
2045467
2045540
+
Trp
CCA
[Ensembl]
¡û
>C121007541
CP003178
Bacteroidota
Niastella koreensis GR20-10 [CP003178]
6103384
6103311
-
Trp
CCA
[Ensembl]
¡û
>W1610867562
LQXS01000005
Bacteroidota
Sphingobacterium sp. CFCC 11742 [LQXS]
128321
128248
-
Trp
CCA
[ENA]
¡û
>W1710547490
FOCZ01000011
Bacteroidota
Niastella yeongjuensis [FOCZ]
198621
198550
-
Trp
CCA
[ENA]
¡û
>W1710570074
FOUX01000002
Bacteroidota
Chitinophaga sp. YR627 [FOUX]
1363317
1363244
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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