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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452415 (25 seq.)
>W1711109771
LTUY01000019
Actinomycetota
Corynebacterium sp. HMSC059E07 HMSC059E07 [LTUY]
25554
25627
+
Gly
CCC
[ENA]
¡û
>W1711186710
LWOK01000050
Actinomycetota
Corynebacterium sp. HMSC05D03 [LWOK]
59766
59839
+
Gly
CCC
[ENA]
¡û
>W131239551
BANT01000036
Actinomycetota
Gordonia hirsuta DSM 44140 = NBRC 16056 [BANT]
2679
2606
-
Gly
CCC
[ENA]
¡û
>W1711511666
MLCQ01000001
Actinomycetota
Corynebacterium sp. NML140438 [MLCQ]
202
129
-
Gly
CCC
[ENA]
¡û
>C171064757
CP017639
Actinomycetota
Corynebacterium sp. NML98-0116 [CP017639]
271174
271101
-
Gly
CCC
-
¡û
>WENV182636023
OJKZ01000116
[OJKZ] metagenome; surface
15651
15578
-
Gly
CCC
[ENA]
¡û
>WENV182644925
OJLY01000838
[OJLY] metagenome; surface
37
110
+
Gly
CCC
[ENA]
¡û
>WENV170552906
CXWK01003656
[CXWK] wastewater metagenome; activated sludge
288693
288766
+
Gly
CCC
[ENA]
¡û
>WENV170976226
MTKZ01005859
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3298
3225
-
Gly
CCC
[ENA]
¡û
>C181117257
CP025435
Actinomycetota
Gordonia sp. YC-JH1 [CP025435]
185717
185644
-
Gly
CCC
-
¡û
>C181211239
LS483404
Actinomycetota
Corynebacterium renale NCTC11140 [LS483404]
144015
144086
+
Gly
CCC
-
¡û
>W1810187361
PKHN01000006
Actinomycetota
Corynebacterium riegelii UMB0243 [PKHN]
115355
115282
-
Gly
CCC
[ENA]
¡û
>C151084498
CP011546
Actinomycetota
Corynebacterium uterequi DSM 45634 [CP011546]
2155497
2155568
+
Gly
CCC
[Ensembl]
¡û
>W2010098296
BJOU01000017
Actinomycetota
Gordonia sp. NBRC 107697 [BJOU]
219076
219149
+
Gly
CCC
[ENA]
¡û
>W2010591846
JABELY010000009
Actinomycetota
Gordonia araii NBRC 100433 IFM 10211 [JABELY]
25229
25302
+
Gly
CCC
[ENA]
¡û
>W2011822122
UFYC01000001
Actinomycetota
Corynebacterium renale NCTC11142 [UFYC]
1662355
1662426
+
Gly
CCC
[ENA]
¡û
>W2012005541
VEJK01000011
Actinomycetota
Corynebacterium glaucum DE0279 [VEJK]
70793
70720
-
Gly
CCC
[ENA]
¡û
>W2012030719
VHIS01000012
Actinomycetota
Corynebacterium aurimucosum 85 [VHIS]
57169
57096
-
Gly
CCC
[ENA]
¡û
>W2012068792
VKDI01000003
Actinomycetota
Corynebacterium aurimucosum 2299 [VKDI]
109646
109573
-
Gly
CCC
[ENA]
¡û
>W2012094150
VMTY01000026
Actinomycetota
Corynebacterium aurimucosum 14-2523 [VMTY]
24805
24732
-
Gly
CCC
[ENA]
¡û
>W2012206585
VXKJ01000048
Actinomycetota
Corynebacterium phocae CCUG 38205T [VXKJ]
209592
209665
+
Gly
CCC
[ENA]
¡û
>C211243984
CP068166
Actinomycetota
Corynebacterium aurimucosum FDAARGOS_1109 [CP068166]
847041
846968
-
Gly
CCC
-
¡û
>W2110746889
LHVQ01000005
Actinomycetota
Gordonia sihwensis MTZ 096 [LHVQ]
2179
2252
+
Gly
CCC
[ENA]
¡û
>C231638933
CP121248
Actinomycetota
Gordonia sihwensis RL-BY03 [CP121248]
162781
162854
+
Gly
CCC
-
¡û
>W11148996
AEUD01000017
Actinomycetota
Gordonia neofelifaecis NRRL B-59395 [AEUD]
36890
36963
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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