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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45249 (45 seq.)
>A171000263
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
962389
962475
+
Leu
TAG
-
¡û
>A171001536
CP002057
Euryarchaeota
Methanococcus voltae [CP002057]
1463407
1463493
+
Leu
TAG
-
¡û
>A171002218
CP002737
Euryarchaeota
Methanotorris igneus Kol 5 [CP002737]
1395491
1395576
+
Leu
TAG
-
¡û
>A171002342
CP002792
Euryarchaeota
Methanothermococcus okinawensis IH1 [CP002792]
819392
819307
-
Leu
TAG
-
¡û
>A171002508
CP002913
Euryarchaeota
Methanococcus maripaludis X1 [CP002913]
1686640
1686554
-
Leu
TAG
-
¡û
>WENV180274934
OBHO01014821
[OBHO] metagenome; water
29
115
+
Leu
TAG
[ENA]
¢þ
>WENV180288169
OBIL01070392
[OBIL] metagenome; hydrothermal vent
72
157
+
Leu
TAG
[ENA]
¢þ
>WENV180316925
OBKJ01001821
[OBKJ] metagenome; hydrothermal vent
228
142
-
Leu
TAG
[ENA]
¢þ
>WENV180316991
OBKJ01004318
[OBKJ] metagenome; hydrothermal vent
164
249
+
Leu
TAG
[ENA]
¢þ
>WENV180332410
OBLD01004535
[OBLD] metagenome; water
162
249
+
Leu
TAG
[ENA]
¢þ
>WENV180332418
OBLD01005638
[OBLD] metagenome; water
191
277
+
Leu
TAG
[ENA]
¢þ
>WENV180581547
OCMK01004690
[OCMK] metagenome; diffuse fluid
384
298
-
Leu
TAG
[ENA]
¢þ
>WENV180582140
OCMO01003113
[OCMO] metagenome; diffuse fluid
121
207
+
Leu
TAG
[ENA]
¢þ
>WENV181206210
OFAT01000356
[OFAT] metagenome; hydrothermal vent
3482
3567
+
Leu
TAG
[ENA]
¢þ
>WENV181206244
OFAT01001276
[OFAT] metagenome; hydrothermal vent
149
63
-
Leu
TAG
[ENA]
¢þ
>WENV181206646
OFAW01000871
[OFAW] metagenome; hydrothermal vent
1928
2014
+
Leu
TAG
[ENA]
¢þ
>WENV181206771
OFAW01005159
[OFAW] metagenome; hydrothermal vent
164
249
+
Leu
TAG
[ENA]
¢þ
>WENV181207238
OFAY01005064
[OFAY] metagenome; hydrothermal vent
162
247
+
Leu
TAG
[ENA]
¢þ
>WENV181207525
OFAZ01001707
[OFAZ] metagenome; hydrothermal vent
191
277
+
Leu
TAG
[ENA]
¢þ
>WENV181207582
OFAZ01004403
[OFAZ] metagenome; hydrothermal vent
271
356
+
Leu
TAG
[ENA]
¢þ
>WENV181207871
OFBA01001510
[OFBA] metagenome; hydrothermal vent
320
406
+
Leu
TAG
[ENA]
¢þ
>WENV181207976
OFBA01005578
[OFBA] metagenome; hydrothermal vent
164
249
+
Leu
TAG
[ENA]
¢þ
>WENV181208264
OFBB01001718
[OFBB] metagenome; hydrothermal vent
2431
2345
-
Leu
TAG
[ENA]
¢þ
>WENV181208362
OFBB01005394
[OFBB] metagenome; hydrothermal vent
271
356
+
Leu
TAG
[ENA]
¢þ
>WENV181208612
OFBC01000255
[OFBC] metagenome; hydrothermal vent
5343
5429
+
Leu
TAG
[ENA]
¢þ
>WENV181223969
OFDD01005241
[OFDD] metagenome; hydrothermal vent
164
251
+
Leu
TAG
[ENA]
¢þ
>WENV181224192
OFDE01000660
[OFDE] metagenome; hydrothermal vent
99
185
+
Leu
TAG
[ENA]
¢þ
>WENV181224284
OFDE01005350
[OFDE] metagenome; hydrothermal vent
675
590
-
Leu
TAG
[ENA]
¢þ
>WENV181224390
OFDF01000139
[OFDF] metagenome; hydrothermal vent
2442
2356
-
Leu
TAG
[ENA]
¢þ
>WENV181224846
OFDG01010162
[OFDG] metagenome; hydrothermal vent
228
142
-
Leu
TAG
[ENA]
¢þ
>WENV181225370
OFDI01000401
[OFDI] metagenome; hydrothermal vent
2305
2219
-
Leu
TAG
[ENA]
¢þ
>At1021
CP000743
Euryarchaeota
Methanococcus aeolicus Nankai-3 [CP000743]
1293938
1294022
+
Leu
TAG
[Ensembl]
¡û
>At1059
CP000609
Euryarchaeota
Methanococcus maripaludis C5 [CP000609]
1700264
1700348
+
Leu
TAG
[Ensembl]
¡û
>At1109
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
893810
893726
-
Leu
TAG
[Ensembl]
¡û
>At1151
BX950229
Euryarchaeota
Methanococcus maripaludis S2 [BX950229]
1601086
1601002
-
Leu
TAG
[Ensembl]
¡û
>At1185
CP000742
Euryarchaeota
Methanococcus vannielii SB [CP000742]
975284
975200
-
Leu
TAG
[Ensembl]
¡û
>W1610000342
AAWI01000004
Euryarchaeota
Methanococcus maripaludis C5 [AAWI]
206148
206062
-
Leu
TAG
[ENA]
¡û
>W1610000354
AAWX01000001
Euryarchaeota
Methanococcus vannielii SB [AAWX]
711855
711769
-
Leu
TAG
[ENA]
¡û
>W1610000417
AAZL01000001
Euryarchaeota
Methanococcus aeolicus Nankai-3 [AAZL]
59724
59810
+
Leu
TAG
[ENA]
¡û
>W1610000451
AAZM01000001
Euryarchaeota
Methanococcus maripaludis C7 [AAZM]
94899
94985
+
Leu
TAG
[ENA]
¡û
>W1610000558
ABFP01000001
Euryarchaeota
Methanococcus maripaludis C6 [ABFP]
63898
63984
+
Leu
TAG
[ENA]
¡û
>W1610000612
ABHB01000001
Euryarchaeota
Methanococcus voltae A3 [ABHB]
111335
111249
-
Leu
TAG
[ENA]
¡û
>W1610002119
AEDA01000001
Euryarchaeota
Methanothermococcus okinawensis IH1 [AEDA]
52128
52041
-
Leu
TAG
[ENA]
¡û
>W1610004300
AGJL01000052
Euryarchaeota
Methanotorris formicicus Mc-S-70 [AGJL]
469
382
-
Leu
TAG
[ENA]
¡û
>W1610018876
AQXV01000015
Euryarchaeota
Methanothermococcus thermolithotrophicus DSM 2095 [AQXV]
9679
9766
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK