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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452490 (17 seq.)
>C08010995
CP000812
Thermotogota
Pseudothermotoga lettingae TMO [CP000812]
944278
944353
+
Arg
TCG
[Ensembl]
¡û
>WENV170675740
LDZQ01000399
[LDZQ] terrestrial metagenome; oil reservoir sample I2
15243
15318
+
Arg
TCG
[ENA]
¢þ
>WENV170676069
LDZR01000707
[LDZR] terrestrial metagenome; oil reservoir sample K2
8068
7993
-
Arg
TCG
[ENA]
¢þ
>WENV170676467
LDZR01002710
[LDZR] terrestrial metagenome; oil reservoir sample K2
15244
15319
+
Arg
TCG
[ENA]
¢þ
>W141561649
JHYP01000004
Thermotogota
Pseudothermotoga elfii DSM 9442 [JHYP]
191034
190959
-
Arg
TCG
[ENA]
¡û
>W141778831
JONI01000004
Thermotogota
Pseudothermotoga hypogea DSM 11164 [JONI]
79411
79486
+
Arg
TCG
[ENA]
¡û
>C141000331
AP014507
Thermotogota
Pseudothermotoga elfii DSM 9442 = NBRC 107921 [AP014507]
939001
939076
+
Arg
TCG
-
¡û
>C141000393
AP014508
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [AP014508]
2070673
2070598
-
Arg
TCG
-
¡û
>C151001660
AP014509
Thermotogota
Thermotoga caldifontis AZM44c09 [AP014509]
1121200
1121125
-
Arg
TCG
-
¡û
>C151001681
AP014510
Thermotogota
Thermotoga profunda AZM34c06 [AP014510]
529180
529255
+
Arg
TCG
-
¡û
>C161005092
CP007141
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [CP007141]
1961561
1961636
+
Arg
TCG
[Ensembl]
¡û
>W1610612542
LGEV01000032
Thermotogota
Thermotoga sp. 50_64 [LGEV]
15243
15318
+
Arg
TCG
[ENA]
¡û
>W1610612889
LGFF01000086
Thermotogota
Pseudothermotoga lettingae [LGFF]
8068
7993
-
Arg
TCG
[ENA]
¡û
>W1610612972
LGFH01000034
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
15244
15319
+
Arg
TCG
[ENA]
¡û
>W1710733940
LGEV01000032
Thermotogota
Thermotoga sp. 50_64 [LGEV]
15243
15318
+
Arg
TCG
[ENA]
¡û
>W1710734171
LGFF01000086
Thermotogota
Pseudothermotoga lettingae [LGFF]
8068
7993
-
Arg
TCG
[ENA]
¡û
>W1710734254
LGFH01000034
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
15244
15319
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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