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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45250 (27 seq.)
>A171000265
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
1052059
1052145
+
Leu
GAG
-
¡û
>A171002510
CP002913
Euryarchaeota
Methanococcus maripaludis X1 [CP002913]
1593010
1592924
-
Leu
GAG
-
¡û
>WENV180274903
OBHO01004093
[OBHO] metagenome; water
220
134
-
Leu
GAG
[ENA]
¢þ
>WENV180316821
OBKJ01000078
[OBKJ] metagenome; hydrothermal vent
6810
6896
+
Leu
GAG
[ENA]
¢þ
>WENV180332352
OBLD01000577
[OBLD] metagenome; water
2774
2860
+
Leu
GAG
[ENA]
¢þ
>WENV180581485
OCMK01000097
[OCMK] metagenome; diffuse fluid
784
698
-
Leu
GAG
[ENA]
¢þ
>WENV180582189
OCMO01008074
[OCMO] metagenome; diffuse fluid
312
398
+
Leu
GAG
[ENA]
¢þ
>WENV181206197
OFAT01000163
[OFAT] metagenome; hydrothermal vent
7142
7228
+
Leu
GAG
[ENA]
¢þ
>WENV181206544
OFAW01000046
[OFAW] metagenome; hydrothermal vent
16083
16169
+
Leu
GAG
[ENA]
¢þ
>WENV181207033
OFAY01000068
[OFAY] metagenome; hydrothermal vent
5686
5600
-
Leu
GAG
[ENA]
¢þ
>WENV181207425
OFAZ01000138
[OFAZ] metagenome; hydrothermal vent
10329
10415
+
Leu
GAG
[ENA]
¢þ
>WENV181207773
OFBA01000075
[OFBA] metagenome; hydrothermal vent
10462
10548
+
Leu
GAG
[ENA]
¢þ
>WENV181208224
OFBB01000699
[OFBB] metagenome; hydrothermal vent
3817
3903
+
Leu
GAG
[ENA]
¢þ
>WENV181208567
OFBC01000045
[OFBC] metagenome; hydrothermal vent
10923
10837
-
Leu
GAG
[ENA]
¢þ
>WENV181223756
OFDD01000126
[OFDD] metagenome; hydrothermal vent
10461
10547
+
Leu
GAG
[ENA]
¢þ
>WENV181224210
OFDE01000977
[OFDE] metagenome; hydrothermal vent
110
24
-
Leu
GAG
[ENA]
¢þ
>WENV181224392
OFDF01000153
[OFDF] metagenome; hydrothermal vent
7128
7214
+
Leu
GAG
[ENA]
¢þ
>WENV181224609
OFDG01000088
[OFDG] metagenome; hydrothermal vent
5855
5769
-
Leu
GAG
[ENA]
¢þ
>WENV181225299
OFDI01000033
[OFDI] metagenome; hydrothermal vent
14024
13938
-
Leu
GAG
[ENA]
¢þ
>At1035
CP000743
Euryarchaeota
Methanococcus aeolicus Nankai-3 [CP000743]
1325718
1325634
-
Leu
GAG
[Ensembl]
¡û
>At1045
CP000609
Euryarchaeota
Methanococcus maripaludis C5 [CP000609]
18648
18732
+
Leu
GAG
[Ensembl]
¡û
>At1107
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
778123
778039
-
Leu
GAG
[Ensembl]
¡û
>At1149
BX950229
Euryarchaeota
Methanococcus maripaludis S2 [BX950229]
1507810
1507726
-
Leu
GAG
[Ensembl]
¡û
>W1610000344
AAWI01000004
Euryarchaeota
Methanococcus maripaludis C5 [AAWI]
107003
106917
-
Leu
GAG
[ENA]
¡û
>W1610000446
AAZL01000001
Euryarchaeota
Methanococcus aeolicus Nankai-3 [AAZL]
91506
91420
-
Leu
GAG
[ENA]
¡û
>W1610000453
AAZM01000001
Euryarchaeota
Methanococcus maripaludis C7 [AAZM]
210586
210672
+
Leu
GAG
[ENA]
¡û
>W1610000560
ABFP01000001
Euryarchaeota
Methanococcus maripaludis C6 [ABFP]
152832
152918
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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