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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452600 (126 seq.)
>W1710777851
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
2359584
2359659
+
Asn
GTT
[ENA]
¡û
>W1710777867
LJCE01000002
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
84827
84902
+
Asn
GTT
[ENA]
¡û
>W1710777916
LJCF01000002
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
226495
226570
+
Asn
GTT
[ENA]
¡û
>W1710777920
LJCF01000003
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
34291
34366
+
Asn
GTT
[ENA]
¡û
>W1710892051
LNDJ01000024
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
40647
40722
+
Asn
GTT
[ENA]
¡û
>W1710915836
LNUO01000001
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
20761
20686
-
Asn
GTT
[ENA]
¡û
>W1711227859
LXWA01000010
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
456
381
-
Asn
GTT
[ENA]
¡û
>W1711227895
LXWA01000083
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
578
653
+
Asn
GTT
[ENA]
¡û
>W1711303119
MAJM01000004
Gammaproteobacteria
Psychrobacter sp. B29-1 [MAJM]
404692
404767
+
Asn
GTT
[ENA]
¡û
>W1711303122
MAJM01000004
Gammaproteobacteria
Psychrobacter sp. B29-1 [MAJM]
524828
524903
+
Asn
GTT
[ENA]
¡û
>W1711682898
MRYA01000001
Gammaproteobacteria
Psychrobacter sp. Cmf 22.2 [MRYA]
517476
517401
-
Asn
GTT
[ENA]
¡û
>W1711682899
MRYA01000001
Gammaproteobacteria
Psychrobacter sp. Cmf 22.2 [MRYA]
517061
516986
-
Asn
GTT
[ENA]
¡û
>W1711682940
MRYB01000001
Gammaproteobacteria
Psychrobacter sp. Rd 27.2 [MRYB]
408396
408321
-
Asn
GTT
[ENA]
¡û
>W1711682948
MRYB01000005
Gammaproteobacteria
Psychrobacter sp. Rd 27.2 [MRYB]
175238
175163
-
Asn
GTT
[ENA]
¡û
>W1711682996
MRYC01000006
Gammaproteobacteria
Psychrobacter sp. C 20.9 [MRYC]
147783
147858
+
Asn
GTT
[ENA]
¡û
>W1711683010
MRYC01000018
Gammaproteobacteria
Psychrobacter sp. C 20.9 [MRYC]
16907
16832
-
Asn
GTT
[ENA]
¡û
>C171019109
CP012969
Gammaproteobacteria
Psychrobacter sp. AntiMn-1 [CP012969]
1030848
1030923
+
Asn
GTT
-
¡û
>C171019111
CP012969
Gammaproteobacteria
Psychrobacter sp. AntiMn-1 [CP012969]
1199339
1199414
+
Asn
GTT
-
¡û
>C171131074
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
2482960
2483035
+
Asn
GTT
-
¡û
>C171131091
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
1029057
1028982
-
Asn
GTT
-
¡û
>C015816
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
1986862
1986937
+
Asn
GTT
[Ensembl]
¡û
>C015833
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
881244
881169
-
Asn
GTT
[Ensembl]
¡û
>C015978
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
2270834
2270909
+
Asn
GTT
[Ensembl]
¡û
>C015996
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
855790
855715
-
Asn
GTT
[Ensembl]
¡û
>WENV180101037
OAOU01000019
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
17009
17084
+
Asn
GTT
[ENA]
¢þ
>WENV180101094
OAOU01000451
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
1379
1454
+
Asn
GTT
[ENA]
¢þ
>WENV180101151
OAOU01001811
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
1602
1527
-
Asn
GTT
[ENA]
¢þ
>w003224
AADI01000004
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
79313
79390
+
Asn
GTT
[ENA]
¡û
>w003217
AADI01000003
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
153936
154013
+
Asn
GTT
[ENA]
¡û
>W141086172
AUSW01000022
Gammaproteobacteria
Psychrobacter aquaticus CMS 56 [AUSW]
27588
27513
-
Asn
GTT
[ENA]
¡û
>W141086184
AUSW01000031
Gammaproteobacteria
Psychrobacter aquaticus CMS 56 [AUSW]
7785
7860
+
Asn
GTT
[ENA]
¡û
>W141199952
AYXM01000046
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
23684
23759
+
Asn
GTT
[ENA]
¡û
>W141199971
AYXM01000081
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
161342
161417
+
Asn
GTT
[ENA]
¡û
>W141200511
AYXZ01000078
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
8086
8161
+
Asn
GTT
[ENA]
¡û
>W141200539
AYXZ01000142
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
22960
23035
+
Asn
GTT
[ENA]
¡û
>W141200551
AYYA01000004
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
146606
146681
+
Asn
GTT
[ENA]
¡û
>W141200576
AYYA01000053
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
25135
25060
-
Asn
GTT
[ENA]
¡û
>C08007213
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
1986862
1986937
+
Asn
GTT
[Ensembl]
¡û
>C08007230
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
881244
881172
-
Asn
GTT
[Ensembl]
¡û
>W141233978
BAWG01000005
Gammaproteobacteria
Psychrobacter sp. JCM 18900 [BAWG]
6913
6838
-
Asn
GTT
[ENA]
¡û
>W141233991
BAWG01000018
Gammaproteobacteria
Psychrobacter sp. JCM 18900 [BAWG]
11527
11452
-
Asn
GTT
[ENA]
¡û
>W141234009
BAWH01000007
Gammaproteobacteria
Psychrobacter sp. JCM 18901 [BAWH]
96435
96360
-
Asn
GTT
[ENA]
¡û
>W141234027
BAWH01000025
Gammaproteobacteria
Psychrobacter sp. JCM 18901 [BAWH]
23449
23374
-
Asn
GTT
[ENA]
¡û
>W141234054
BAWI01000004
Gammaproteobacteria
Psychrobacter sp. JCM 18902 [BAWI]
16927
16852
-
Asn
GTT
[ENA]
¡û
>W141234063
BAWI01000011
Gammaproteobacteria
Psychrobacter sp. JCM 18902 [BAWI]
84193
84268
+
Asn
GTT
[ENA]
¡û
>W141234074
BAWJ01000001
Gammaproteobacteria
Psychrobacter sp. JCM 18903 [BAWJ]
112231
112156
-
Asn
GTT
[ENA]
¡û
>W141234106
BAWJ01000017
Gammaproteobacteria
Psychrobacter sp. JCM 18903 [BAWJ]
69879
69954
+
Asn
GTT
[ENA]
¡û
>WENV182542180
OJAV01007079
[OJAV] seawater metagenome; Sea water
1032
957
-
Asn
GTT
[ENA]
¢þ
>WENV182549815
OJBZ01000065
[OJBZ] seawater metagenome; Sea water
17454
17529
+
Asn
GTT
[ENA]
¢þ
>WENV182549898
OJBZ01000288
[OJBZ] seawater metagenome; Sea water
5619
5544
-
Asn
GTT
[ENA]
¢þ
>WENV182562314
OJDZ01000757
[OJDZ] seawater metagenome; Sea water
7403
7478
+
Asn
GTT
[ENA]
¢þ
>WENV182591960
OJIO01025369
[OJIO] seawater metagenome; Sea water
200
275
+
Asn
GTT
[ENA]
¢þ
>WENV170014711
AYSL01006143
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
2557
2482
-
Asn
GTT
[ENA]
¢þ
>WENV170014760
AYSL01009560
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
116
191
+
Asn
GTT
[ENA]
¢þ
>WENV170242172
CEQO01035515
[CEQO] marine metagenome genome assembly TARA_078_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
484
559
+
Asn
GTT
[ENA]
¢þ
>WENV170243503
CEQO01156446
[CEQO] marine metagenome genome assembly TARA_078_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
568
493
-
Asn
GTT
[ENA]
¢þ
>WENV170290821
CESA01055595
[CESA] marine metagenome genome assembly TARA_078_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
127
202
+
Asn
GTT
[ENA]
¢þ
>WENV170291282
CESA01109091
[CESA] marine metagenome genome assembly TARA_078_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
692
767
+
Asn
GTT
[ENA]
¢þ
>WENV170721613
LSQX01196981
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
92
167
+
Asn
GTT
[ENA]
¢þ
>WENV170790673
MDSV01069960
[MDSV] marine metagenome; seawater
373
448
+
Asn
GTT
[ENA]
¢þ
>WENV170796944
MDSV01172046
[MDSV] marine metagenome; seawater
95
20
-
Asn
GTT
[ENA]
¢þ
>WENV170824557
MDSY01077997
[MDSY] marine metagenome; seawater
432
507
+
Asn
GTT
[ENA]
¢þ
>C181056028
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
968258
968333
+
Asn
GTT
-
¡û
>C181056052
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
2620638
2620563
-
Asn
GTT
-
¡û
>C191163869
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
922352
922277
-
Asn
GTT
-
¡û
>C191163871
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
725295
725220
-
Asn
GTT
-
¡û
>W09103301
AAJC01000001
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
53290
53215
-
Asn
GTT
[ENA]
¡û
>W09103315
AAJC01000006
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
34933
34858
-
Asn
GTT
[ENA]
¡û
>W1910377581
FUKN01000001
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
449206
449131
-
Asn
GTT
[ENA]
¡û
>W1910377586
FUKN01000005
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
214646
214721
+
Asn
GTT
[ENA]
¡û
>W1910891643
NEXR01000003
Gammaproteobacteria
Psychrobacter sp. L7 [NEXR]
216214
216139
-
Asn
GTT
[ENA]
¡û
>W1910891653
NEXR01000009
Gammaproteobacteria
Psychrobacter sp. L7 [NEXR]
15952
16027
+
Asn
GTT
[ENA]
¡û
>W1910891759
NEXU01000001
Gammaproteobacteria
Psychrobacter sp. DAB_AL32B [NEXU]
12984
12909
-
Asn
GTT
[ENA]
¡û
>W1910891771
NEXU01000060
Gammaproteobacteria
Psychrobacter sp. DAB_AL32B [NEXU]
1760
1835
+
Asn
GTT
[ENA]
¡û
>W1911203669
NRGY01000002
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
994702
994627
-
Asn
GTT
[ENA]
¡û
>W1911203671
NRGY01000002
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
812948
812873
-
Asn
GTT
[ENA]
¡û
>W1911534852
OLML01000001
Gammaproteobacteria
Psychrobacter sp. Marseille-P5312 [OLML]
319097
319172
+
Asn
GTT
[ENA]
¡û
>W1911534876
OLML01000001
Gammaproteobacteria
Psychrobacter sp. Marseille-P5312 [OLML]
2070348
2070273
-
Asn
GTT
[ENA]
¡û
>W1810155480
PJAS01000075
Gammaproteobacteria
Psychrobacter sp. 4Bb [PJAS]
89060
88985
-
Asn
GTT
[ENA]
¡û
>W1810155482
PJAS01000076
Gammaproteobacteria
Psychrobacter sp. 4Bb [PJAS]
113979
114054
+
Asn
GTT
[ENA]
¡û
>W1810155484
PJAT01000012
Gammaproteobacteria
Psychrobacter sp. 4Dc [PJAT]
5656
5581
-
Asn
GTT
[ENA]
¡û
>W1810155499
PJAT01000084
Gammaproteobacteria
Psychrobacter sp. 4Dc [PJAT]
17954
17879
-
Asn
GTT
[ENA]
¡û
>W1810156164
PJBD01000001
Gammaproteobacteria
Psychrobacter sp. Choline-02u-13 [PJBD]
63843
63768
-
Asn
GTT
[ENA]
¡û
>W1810156185
PJBD01000036
Gammaproteobacteria
Psychrobacter sp. Choline-02u-13 [PJBD]
40045
40120
+
Asn
GTT
[ENA]
¡û
>W1810156318
PJBF01000040
Gammaproteobacteria
Psychrobacter sp. Choline-02u-9 [PJBF]
399739
399814
+
Asn
GTT
[ENA]
¡û
>W1810156330
PJBF01000054
Gammaproteobacteria
Psychrobacter sp. Choline-02u-9 [PJBF]
60332
60257
-
Asn
GTT
[ENA]
¡û
>W1810156447
PJBH01000069
Gammaproteobacteria
Psychrobacter sp. Choline-3u-12 [PJBH]
173960
173885
-
Asn
GTT
[ENA]
¡û
>W1810156449
PJBH01000069
Gammaproteobacteria
Psychrobacter sp. Choline-3u-12 [PJBH]
60366
60291
-
Asn
GTT
[ENA]
¡û
>W1810157241
PJBU01000073
Gammaproteobacteria
Psychrobacter sp. MES7-P7E [PJBU]
52675
52750
+
Asn
GTT
[ENA]
¡û
>W1810157258
PJBU01000096
Gammaproteobacteria
Psychrobacter sp. MES7-P7E [PJBU]
30774
30699
-
Asn
GTT
[ENA]
¡û
>W1810157374
PJBX01000142
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
14701
14626
-
Asn
GTT
[ENA]
¡û
>W1810157399
PJBX01000180
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
86892
86817
-
Asn
GTT
[ENA]
¡û
>W1810157428
PJBY01000095
Gammaproteobacteria
Psychrobacter sp. Sarcosine-3u-12 [PJBY]
16374
16299
-
Asn
GTT
[ENA]
¡û
>W1810157430
PJBY01000098
Gammaproteobacteria
Psychrobacter sp. Sarcosine-3u-12 [PJBY]
18048
17973
-
Asn
GTT
[ENA]
¡û
>W1810596380
QGGM01000001
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
80510
80585
+
Asn
GTT
[ENA]
¡û
>W1810596382
QGGM01000001
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
235265
235340
+
Asn
GTT
[ENA]
¡û
>W1810671427
QJSU01000002
Gammaproteobacteria
Psychrobacter fozii CECT 5889 [QJSU]
291332
291257
-
Asn
GTT
[ENA]
¡û
>W1810671448
QJSU01000012
Gammaproteobacteria
Psychrobacter fozii CECT 5889 [QJSU]
88418
88493
+
Asn
GTT
[ENA]
¡û
>W1810692652
QLKS01000001
Gammaproteobacteria
Psychrobacter proteolyticus HAMBI_2948 [QLKS]
683594
683669
+
Asn
GTT
[ENA]
¡û
>W1810692654
QLKS01000001
Gammaproteobacteria
Psychrobacter proteolyticus HAMBI_2948 [QLKS]
832272
832347
+
Asn
GTT
[ENA]
¡û
>C161042740
CP012529
Gammaproteobacteria
Psychrobacter sp. P2G3 [CP012529]
2358562
2358637
+
Asn
GTT
-
¡û
>C161042788
CP012533
Gammaproteobacteria
Psychrobacter sp. P11G5 [CP012533]
2427299
2427374
+
Asn
GTT
[Ensembl]
¡û
>C161079265
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
2323090
2323165
+
Asn
GTT
[Ensembl]
¡û
>C161079267
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
2520146
2520221
+
Asn
GTT
[Ensembl]
¡û
>W121043492
AHVZ01000006
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
109853
109778
-
Asn
GTT
[ENA]
¡û
>W121043514
AHVZ01000022
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
90794
90869
+
Asn
GTT
[ENA]
¡û
>W1610112396
CZJV02000088
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
111911
111836
-
Asn
GTT
[ENA]
¡û
>W1610112420
CZJV02000138
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
22644
22719
+
Asn
GTT
[ENA]
¡û
>C131017388
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
2270565
2270640
+
Asn
GTT
[Ensembl]
¡û
>C131017406
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
894637
894562
-
Asn
GTT
[Ensembl]
¡û
>W1610632728
LIQB01000002
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
136186
136111
-
Asn
GTT
[ENA]
¡û
>W1610632743
LIQB01000006
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
96635
96710
+
Asn
GTT
[ENA]
¡û
>W1610642037
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
2359584
2359659
+
Asn
GTT
[ENA]
¡û
>W1610642053
LJCE01000002
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
84827
84902
+
Asn
GTT
[ENA]
¡û
>W1610642102
LJCF01000002
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
226495
226570
+
Asn
GTT
[ENA]
¡û
>W1610642106
LJCF01000003
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
34291
34366
+
Asn
GTT
[ENA]
¡û
>W1610752317
LNDJ01000024
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
40647
40722
+
Asn
GTT
[ENA]
¡û
>W1610774075
LNUO01000001
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
20761
20686
-
Asn
GTT
[ENA]
¡û
>W1611011823
LXWA01000010
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
456
381
-
Asn
GTT
[ENA]
¡û
>W1611011859
LXWA01000083
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
578
653
+
Asn
GTT
[ENA]
¡û
>W1710115100
CZJV02000088
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
111911
111836
-
Asn
GTT
[ENA]
¡û
>W1710115124
CZJV02000138
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
22644
22719
+
Asn
GTT
[ENA]
¡û
>W1710513802
FNAL01000003
Gammaproteobacteria
Psychrobacter pacificensis [FNAL]
180064
179989
-
Asn
GTT
[ENA]
¡û
>W1710513804
FNAL01000003
Gammaproteobacteria
Psychrobacter pacificensis [FNAL]
17414
17339
-
Asn
GTT
[ENA]
¡û
>W1710767160
LIQB01000002
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
136186
136111
-
Asn
GTT
[ENA]
¡û
>W1710767175
LIQB01000006
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
96635
96710
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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