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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452601 (90 seq.)
>W1710777861
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
811631
811556
-
Lys
TTT
[ENA]
¡û
>W1710777862
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
811396
811321
-
Lys
TTT
[ENA]
¡û
>W1711227893
LXWA01000082
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
4094
4019
-
Lys
TTT
[ENA]
¡û
>W1711227894
LXWA01000082
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
3863
3788
-
Lys
TTT
[ENA]
¡û
>W1711682926
MRYA01000006
Gammaproteobacteria
Psychrobacter sp. Cmf 22.2 [MRYA]
14844
14769
-
Lys
TTT
[ENA]
¡û
>W1711682927
MRYA01000006
Gammaproteobacteria
Psychrobacter sp. Cmf 22.2 [MRYA]
14463
14388
-
Lys
TTT
[ENA]
¡û
>W1711682952
MRYB01000005
Gammaproteobacteria
Psychrobacter sp. Rd 27.2 [MRYB]
10490
10415
-
Lys
TTT
[ENA]
¡û
>W1711682953
MRYB01000005
Gammaproteobacteria
Psychrobacter sp. Rd 27.2 [MRYB]
10050
9975
-
Lys
TTT
[ENA]
¡û
>C171131092
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
766823
766748
-
Lys
TTT
-
¡û
>C171131093
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
766589
766514
-
Lys
TTT
-
¡û
>C015834
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
674783
674708
-
Lys
TTT
[Ensembl]
¡û
>C015835
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
674551
674476
-
Lys
TTT
[Ensembl]
¡û
>C015997
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
666151
666076
-
Lys
TTT
[Ensembl]
¡û
>C015998
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
665856
665781
-
Lys
TTT
[Ensembl]
¡û
>C017905
CP000713
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [CP000713]
2280867
2280942
+
Lys
TTT
[Ensembl]
¡û
>C017906
CP000713
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [CP000713]
2281196
2281271
+
Lys
TTT
[Ensembl]
¡û
>WENV180101086
OAOU01000317
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
208
283
+
Lys
TTT
[ENA]
¢þ
>WENV180101194
OAOU01005197
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
907
982
+
Lys
TTT
[ENA]
¢þ
>WENV180101428
OAOU01060847
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
100
175
+
Lys
TTT
[ENA]
¢þ
>w003219
AADI01000003
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
357337
357412
+
Lys
TTT
[ENA]
¡û
>w003218
AADI01000003
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
357105
357180
+
Lys
TTT
[ENA]
¡û
>W141086169
AUSW01000015
Gammaproteobacteria
Psychrobacter aquaticus CMS 56 [AUSW]
11765
11690
-
Lys
TTT
[ENA]
¡û
>W141086170
AUSW01000015
Gammaproteobacteria
Psychrobacter aquaticus CMS 56 [AUSW]
11529
11454
-
Lys
TTT
[ENA]
¡û
>W141199956
AYXM01000069
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
116177
116252
+
Lys
TTT
[ENA]
¡û
>W141199957
AYXM01000069
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
116409
116484
+
Lys
TTT
[ENA]
¡û
>W141200503
AYXZ01000028
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
110421
110496
+
Lys
TTT
[ENA]
¡û
>W141200504
AYXZ01000028
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
110653
110728
+
Lys
TTT
[ENA]
¡û
>W141200594
AYYA01000082
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
13626
13551
-
Lys
TTT
[ENA]
¡û
>W141200595
AYYA01000082
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
13394
13319
-
Lys
TTT
[ENA]
¡û
>C08007231
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
674783
674711
-
Lys
TTT
[Ensembl]
¡û
>C08007232
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
674551
674479
-
Lys
TTT
[Ensembl]
¡û
>W141234051
BAWI01000003
Gammaproteobacteria
Psychrobacter sp. JCM 18902 [BAWI]
10757
10682
-
Lys
TTT
[ENA]
¡û
>W141234052
BAWI01000003
Gammaproteobacteria
Psychrobacter sp. JCM 18902 [BAWI]
10521
10446
-
Lys
TTT
[ENA]
¡û
>W141234079
BAWJ01000002
Gammaproteobacteria
Psychrobacter sp. JCM 18903 [BAWJ]
12329
12254
-
Lys
TTT
[ENA]
¡û
>W141234080
BAWJ01000002
Gammaproteobacteria
Psychrobacter sp. JCM 18903 [BAWJ]
12093
12018
-
Lys
TTT
[ENA]
¡û
>WENV170243272
CEQO01136926
[CEQO] marine metagenome genome assembly TARA_078_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1305
1380
+
Lys
TTT
[ENA]
¢þ
>WENV170291208
CESA01099425
[CESA] marine metagenome genome assembly TARA_078_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
186
261
+
Lys
TTT
[ENA]
¢þ
>WENV170578465
FUFK010017266
[FUFK] metagenome; unknown
602
527
-
Lys
TTT
[ENA]
¢þ
>WENV170581335
FUFK010061380
[FUFK] metagenome; unknown
14390
14465
+
Lys
TTT
[ENA]
¢þ
>WENV170587617
FUFK010505562
[FUFK] metagenome; unknown
715
640
-
Lys
TTT
[ENA]
¢þ
>WENV170593084
FUFK010841507
[FUFK] metagenome; unknown
4340
4265
-
Lys
TTT
[ENA]
¢þ
>WENV170720784
LSQX01166183
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2474
2399
-
Lys
TTT
[ENA]
¢þ
>WENV170828335
MDSY01147711
[MDSY] marine metagenome; seawater
1121
1046
-
Lys
TTT
[ENA]
¢þ
>C181056053
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
2430999
2430924
-
Lys
TTT
-
¡û
>C181056054
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
2430704
2430629
-
Lys
TTT
-
¡û
>C181185217
CP029789
Gammaproteobacteria
Psychrobacter sp. YP14 [CP029789]
2099787
2099862
+
Lys
TTT
-
¡û
>C181185218
CP029789
Gammaproteobacteria
Psychrobacter sp. YP14 [CP029789]
2100116
2100191
+
Lys
TTT
-
¡û
>C191163846
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
2457589
2457664
+
Lys
TTT
-
¡û
>C191163847
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
2457826
2457901
+
Lys
TTT
-
¡û
>W141552147
JHOL01000005
Gammaproteobacteria
Psychrobacter sp. 310(2012) [JHOL]
2275
2200
-
Lys
TTT
[ENA]
¡û
>W141552148
JHOL01000005
Gammaproteobacteria
Psychrobacter sp. 310(2012) [JHOL]
1982
1907
-
Lys
TTT
[ENA]
¡û
>W09103311
AAJC01000005
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
15765
15690
-
Lys
TTT
[ENA]
¡û
>W09103312
AAJC01000005
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
15470
15395
-
Lys
TTT
[ENA]
¡û
>W09105592
AAPX01000029
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [AAPX]
14590
14515
-
Lys
TTT
[ENA]
¡û
>W1910377603
FUKN01000013
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
11566
11491
-
Lys
TTT
[ENA]
¡û
>W1910377604
FUKN01000013
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
11347
11272
-
Lys
TTT
[ENA]
¡û
>W1910891647
NEXR01000003
Gammaproteobacteria
Psychrobacter sp. L7 [NEXR]
15618
15543
-
Lys
TTT
[ENA]
¡û
>W1910891648
NEXR01000003
Gammaproteobacteria
Psychrobacter sp. L7 [NEXR]
15178
15103
-
Lys
TTT
[ENA]
¡û
>W1910891788
NEXU01000107
Gammaproteobacteria
Psychrobacter sp. DAB_AL32B [NEXU]
4765
4690
-
Lys
TTT
[ENA]
¡û
>W1910891789
NEXU01000107
Gammaproteobacteria
Psychrobacter sp. DAB_AL32B [NEXU]
4532
4457
-
Lys
TTT
[ENA]
¡û
>W1911203636
NRGY01000001
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
935527
935602
+
Lys
TTT
[ENA]
¡û
>W1911203637
NRGY01000001
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
935752
935827
+
Lys
TTT
[ENA]
¡û
>W1911534880
OLML01000001
Gammaproteobacteria
Psychrobacter sp. Marseille-P5312 [OLML]
1883866
1883791
-
Lys
TTT
[ENA]
¡û
>W1911534881
OLML01000001
Gammaproteobacteria
Psychrobacter sp. Marseille-P5312 [OLML]
1883768
1883693
-
Lys
TTT
[ENA]
¡û
>W1810157389
PJBX01000171
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
38655
38730
+
Lys
TTT
[ENA]
¡û
>W1810157390
PJBX01000171
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
38887
38962
+
Lys
TTT
[ENA]
¡û
>W1810157404
PJBY01000003
Gammaproteobacteria
Psychrobacter sp. Sarcosine-3u-12 [PJBY]
9681
9756
+
Lys
TTT
[ENA]
¡û
>W1810157405
PJBY01000003
Gammaproteobacteria
Psychrobacter sp. Sarcosine-3u-12 [PJBY]
9913
9988
+
Lys
TTT
[ENA]
¡û
>W1810596418
QGGM01000018
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
1445
1370
-
Lys
TTT
[ENA]
¡û
>W1810596419
QGGM01000018
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
1210
1135
-
Lys
TTT
[ENA]
¡û
>W1810671431
QJSU01000002
Gammaproteobacteria
Psychrobacter fozii CECT 5889 [QJSU]
13665
13590
-
Lys
TTT
[ENA]
¡û
>W1810671432
QJSU01000002
Gammaproteobacteria
Psychrobacter fozii CECT 5889 [QJSU]
13429
13354
-
Lys
TTT
[ENA]
¡û
>W11163488
AFHU01000170
Gammaproteobacteria
Psychrobacter sp. 1501(2011) [AFHU]
22482
22557
+
Lys
TTT
[ENA]
¡û
>W11163489
AFHU01000170
Gammaproteobacteria
Psychrobacter sp. 1501(2011) [AFHU]
22775
22850
+
Lys
TTT
[ENA]
¡û
>C161079293
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
783921
783846
-
Lys
TTT
[Ensembl]
¡û
>C161079294
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
783684
783609
-
Lys
TTT
[Ensembl]
¡û
>W1610112421
CZJV02000141
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
10603
10528
-
Lys
TTT
[ENA]
¡û
>W1610112422
CZJV02000141
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
10368
10293
-
Lys
TTT
[ENA]
¡û
>C131017407
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
663954
663879
-
Lys
TTT
[Ensembl]
¡û
>C131017408
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
663659
663584
-
Lys
TTT
[Ensembl]
¡û
>W1610632736
LIQB01000003
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
773147
773222
+
Lys
TTT
[ENA]
¡û
>W1610632759
LIQB01000015
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
25
100
+
Lys
TTT
[ENA]
¡û
>W1610642047
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
811631
811556
-
Lys
TTT
[ENA]
¡û
>W1610642048
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
811396
811321
-
Lys
TTT
[ENA]
¡û
>W1611011857
LXWA01000082
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
4094
4019
-
Lys
TTT
[ENA]
¡û
>W1611011858
LXWA01000082
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
3863
3788
-
Lys
TTT
[ENA]
¡û
>W1710115125
CZJV02000141
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
10603
10528
-
Lys
TTT
[ENA]
¡û
>W1710115126
CZJV02000141
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
10368
10293
-
Lys
TTT
[ENA]
¡û
>W1710767168
LIQB01000003
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
773147
773222
+
Lys
TTT
[ENA]
¡û
>W1710767191
LIQB01000015
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
25
100
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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