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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452691 (57 seq.)
>W1710792777
LJOP01000009
Cyanobacteriota
Anabaena sp. LE011-02 39865 [LJOP]
9859
9932
+
Met
CAT
[ENA]
¡û
>W1710792833
LJOQ01000050
Cyanobacteriota
Anabaena sp. AL09 39864 [LJOQ]
10610
10537
-
Met
CAT
[ENA]
¡û
>W1710792875
LJOS01000020
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
9973
10046
+
Met
CAT
[ENA]
¡û
>W1710792919
LJOU01000056
Cyanobacteriota
Anabaena sp. AL93 WA93 [LJOU]
22688
22761
+
Met
CAT
[ENA]
¡û
>W1710792943
LJOV01000019
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
17801
17874
+
Met
CAT
[ENA]
¡û
>W1710793004
LJOW01000042
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
26082
26009
-
Met
CAT
[ENA]
¡û
>W1710793066
LJOX01000024
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
45665
45738
+
Met
CAT
[ENA]
¡û
>W1710793099
LJOY01000006
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
51882
51955
+
Met
CAT
[ENA]
¡û
>W1711081242
LSSA01000319
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
32920
32993
+
Met
CAT
[ENA]
¡û
>W1711092455
LTEC01000034
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
14591
14664
+
Met
CAT
[ENA]
¡û
>W1711283617
LZQD01000004
Cyanobacteriota
Trichormus sp. NMC-1 [LZQD]
123626
123554
-
Met
CAT
[ENA]
¡û
>W141022896
AJWF01000005
Cyanobacteriota
Anabaena sp. PCC 7108 [AJWF]
32399
32327
-
Met
CAT
[ENA]
¡û
>w002283
AAAY02000035
Cyanobacteriota
Nostoc punctiforme [AAAY]
33083
33008
-
Met
CAT
[ENA]
¡û
>WENV181841058
OGVQ01000052
[OGVQ] freshwater metagenome; freshwater
7326
7254
-
Ile2
CAT
[ENA]
¢þ
>W141221410
AZYY01000097
Cyanobacteriota
Aphanizomenon flos-aquae NIES-81 [AZYY]
24382
24455
+
Met
CAT
[ENA]
¡û
>C08006903
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
5573060
5573133
+
Met
CAT
[Ensembl]
¡û
>WENV171003081
NNBT01000179
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
6058
6131
+
Met
CAT
[ENA]
¢þ
>WENV171003427
NNBU01000012
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
19715
19788
+
Met
CAT
[ENA]
¢þ
>WENV171003690
NNBV01000213
[NNBV] plant metagenome; symbiotic tissue sample KVS11
7525
7598
+
Met
CAT
[ENA]
¢þ
>C181105241
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
6065357
6065284
-
Met
CAT
-
¡û
>C181137855
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
2147317
2147244
-
Met
CAT
-
¡û
>C191083053
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
5672754
5672827
+
Met
CAT
-
¡û
>W09125761
ACIR01000077
Cyanobacteriota
Trichormus azollae 708 [ACIR]
19203
19131
-
Met
CAT
[ENA]
¡û
>W1910020504
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
5825194
5825267
+
Met
CAT
[ENA]
¡û
>W1910175515
BJCE01000165
Cyanobacteriota
Sphaerospermopsis reniformis NIES-1949 [BJCE]
11724
11652
-
Met
CAT
[ENA]
¡û
>W1910596216
LAGX01000048
Cyanobacteriota
Nostoc linckia z1 [LAGX]
32963
33036
+
Met
CAT
[ENA]
¡û
>W1910596304
LAGY01000060
Cyanobacteriota
Nostoc linckia z2 [LAGY]
18731
18804
+
Met
CAT
[ENA]
¡û
>W1910596387
LAGZ01000058
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
18633
18706
+
Met
CAT
[ENA]
¡û
>W1910596466
LAHA01000051
Cyanobacteriota
Nostoc linckia z4 [LAHA]
19108
19181
+
Met
CAT
[ENA]
¡û
>W1910596549
LAHB01000055
Cyanobacteriota
Nostoc linckia z6 [LAHB]
18619
18692
+
Met
CAT
[ENA]
¡û
>W1910596643
LAHC01000068
Cyanobacteriota
Nostoc linckia z7 [LAHC]
35440
35367
-
Met
CAT
[ENA]
¡û
>W1910596720
LAHD01000060
Cyanobacteriota
Nostoc linckia z8 [LAHD]
25214
25141
-
Met
CAT
[ENA]
¡û
>W1910596790
LAHE01000056
Cyanobacteriota
Nostoc linckia z9 [LAHE]
35455
35382
-
Met
CAT
[ENA]
¡û
>W1910596841
LAHF01000021
Cyanobacteriota
Nostoc linckia z13 [LAHF]
25322
25249
-
Met
CAT
[ENA]
¡û
>W1910596930
LAHG01000039
Cyanobacteriota
Nostoc linckia z14 [LAHG]
35285
35212
-
Met
CAT
[ENA]
¡û
>W1910597024
LAHH01000036
Cyanobacteriota
Nostoc linckia z15 [LAHH]
35493
35420
-
Met
CAT
[ENA]
¡û
>W1910597098
LAHI01000034
Cyanobacteriota
Nostoc linckia z16 [LAHI]
32595
32668
+
Met
CAT
[ENA]
¡û
>W1910597198
LAHJ01000045
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
35468
35395
-
Met
CAT
[ENA]
¡û
>W1910646704
LWSY01000178
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
41786
41859
+
Met
CAT
[ENA]
¡û
>W1910792679
MRBZ01000041
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
17827
17754
-
Met
CAT
[ENA]
¡û
>W1911118709
NOLJ01000001
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
284722
284795
+
Met
CAT
[ENA]
¡û
>W1911244276
NSHF01000237
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
1743
1670
-
Met
CAT
[ENA]
¡û
>W1911581763
PGEM01000004
Cyanobacteriota
Cuspidothrix issatschenkoi CHARLIE-1 [PGEM]
42586
42659
+
Met
CAT
[ENA]
¡û
>C151004158
CP003284
Cyanobacteriota
Anabaena sp. 90 [CP003284, CP003285]
829933
830006
+
Met
CAT
[Ensembl]
¡û
>C151082948
CP011456
Cyanobacteriota
Anabaena sp. WA102 [CP011456]
1331130
1331203
+
Met
CAT
-
¡û
>C11115555
CP002059
Cyanobacteriota
Nostoc azollae' 0708 [CP002059]
4815690
4815618
-
Met
CAT
[Ensembl]
¡û
>W1511364919
JSDP01000269
Cyanobacteriota
Aphanizomenon flos-aquae 2012/KM1/D3 [JSDP]
21854
21927
+
Met
CAT
[ENA]
¡û
>W1610656702
LJOP01000009
Cyanobacteriota
Anabaena sp. LE011-02 39865 [LJOP]
9859
9932
+
Met
CAT
[ENA]
¡û
>W1610656758
LJOQ01000050
Cyanobacteriota
Anabaena sp. AL09 39864 [LJOQ]
10610
10537
-
Met
CAT
[ENA]
¡û
>W1610656839
LJOS01000020
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
9973
10046
+
Met
CAT
[ENA]
¡û
>W1610656923
LJOU01000056
Cyanobacteriota
Anabaena sp. AL93 WA93 [LJOU]
22688
22761
+
Met
CAT
[ENA]
¡û
>W1610656947
LJOV01000019
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
17801
17874
+
Met
CAT
[ENA]
¡û
>W1610657008
LJOW01000042
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
26082
26009
-
Met
CAT
[ENA]
¡û
>W1610657070
LJOX01000024
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
45665
45738
+
Met
CAT
[ENA]
¡û
>W1610657103
LJOY01000006
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
51882
51955
+
Met
CAT
[ENA]
¡û
>W1610926493
LTEC01000034
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
14591
14664
+
Met
CAT
[ENA]
¡û
>W1610931014
LUFH01000471
Cyanobacteriota
Sphaerospermopsis aphanizomenoides BCCUSP55 [LUFH]
75
147
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK