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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452757 (89 seq.)
>W1710862454
LMEJ01000016
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
847758
847833
+
Met
CAT
[ENA]
¡û
>W1710863906
LMFM01000002
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
110640
110715
+
Met
CAT
[ENA]
¡û
>W1710865023
LMGI01000003
Alphaproteobacteria
Sphingopyxis sp. Root154 [LMGI]
502593
502668
+
Met
CAT
[ENA]
¡û
>W1710867311
LMID01000016
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
34986
34911
-
Met
CAT
[ENA]
¡û
>W1710867433
LMIG01000005
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
502435
502510
+
Met
CAT
[ENA]
¡û
>W1710871122
LMLB01000001
Alphaproteobacteria
Sphingomonas sp. Leaf33 [LMLB]
1991429
1991504
+
Met
CAT
[ENA]
¡û
>W1710872060
LMLS01000001
Alphaproteobacteria
Sphingomonas sp. Leaf231 [LMLS]
38801
38876
+
Met
CAT
[ENA]
¡û
>W1710872831
LMMH01000023
Alphaproteobacteria
Sphingomonas sp. Leaf257 [LMMH]
20243
20168
-
Met
CAT
[ENA]
¡û
>W1710876489
LMPG01000014
Alphaproteobacteria
Sphingomonas sp. Leaf343 [LMPG]
7886
7811
-
Met
CAT
[ENA]
¡û
>W1710878037
LMQP01000003
Alphaproteobacteria
Sphingomonas sp. Leaf412 [LMQP]
1270086
1270161
+
Met
CAT
[ENA]
¡û
>W1710912514
LNRR01000004
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
352206
352281
+
Met
CAT
[ENA]
¡û
>W1710912566
LNRS01000003
Alphaproteobacteria
Sphingopyxis sp. H012 [LNRS]
123996
123921
-
Met
CAT
[ENA]
¡û
>W1710912604
LNRT01000002
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
36987
36912
-
Met
CAT
[ENA]
¡û
>W1710912657
LNRU01000005
Alphaproteobacteria
Sphingopyxis sp. H053 [LNRU]
123996
123921
-
Met
CAT
[ENA]
¡û
>W1710912693
LNRV01000006
Alphaproteobacteria
Sphingopyxis sp. H077 [LNRV]
24258
24183
-
Met
CAT
[ENA]
¡û
>W1710912748
LNRW01000008
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
24258
24183
-
Met
CAT
[ENA]
¡û
>W1710912793
LNRX01000007
Alphaproteobacteria
Sphingopyxis sp. H085 [LNRX]
24258
24183
-
Met
CAT
[ENA]
¡û
>W1710912828
LNRY01000005
Alphaproteobacteria
Sphingopyxis sp. H093 [LNRY]
173322
173397
+
Met
CAT
[ENA]
¡û
>W1711075316
LSKH01000244
Alphaproteobacteria
Sphingomonas sp. CCH5-D11 [LSKH]
62564
62489
-
Met
CAT
[ENA]
¡û
>W1711387023
MEGC01000067
Alphaproteobacteria
Novosphingobium sp. SCN 63-17 [MEGC]
151
76
-
Met
CAT
[ENA]
¡û
>W1711434796
MINO01000001
Alphaproteobacteria
Sphingobium phenoxybenzoativorans [MINO]
299213
299288
+
Met
CAT
[ENA]
¡û
>W1711662307
MQUI01000024
Alphaproteobacteria
Sphingomonas sp. Sph1(2015) [MQUI]
54679
54604
-
Met
CAT
[ENA]
¡û
>W1711942686
NBBI01000004
Alphaproteobacteria
Sphingomonas dokdonensis [NBBI]
368087
368162
+
Met
CAT
[ENA]
¡û
>W1711942723
NBBJ01000001
Alphaproteobacteria
Sphingomonas mucosissima [NBBJ]
675242
675167
-
Met
CAT
[ENA]
¡û
>W1712105763
NISJ01000001
Alphaproteobacteria
Sphingopyxis witflariensis [NISJ]
33996
33921
-
Met
CAT
[ENA]
¡û
>W131098612
AORY01000001
Alphaproteobacteria
Sphingomonas sp. Mn802worker [AORY]
219580
219655
+
Met
CAT
[ENA]
¡û
>W131214359
ATTZ01000148
Alphaproteobacteria
Sphingomonas sp. JGI 0001002-C18 [ATTZ]
8446
8521
+
Met
CAT
[ENA]
¡û
>W131237489
AUOO01000274
Alphaproteobacteria
Sphingomonas sp. JGI 0001002-I20 [AUOO]
35917
35842
-
Met
CAT
[ENA]
¡û
>C171029681
CP013916
Alphaproteobacteria
Sphingomonas sp. LK11 [CP013916]
2518655
2518730
+
Met
CAT
-
¡û
>C171095048
CP019511
Alphaproteobacteria
Sphingomonas sp. LM7 [CP019511]
838237
838312
+
Met
CAT
-
¡û
>C171108887
CP020538
Alphaproteobacteria
Sphingobium herbicidovorans MH [CP020538]
392484
392409
-
Met
CAT
-
¡û
>WENV180026306
FTIT01001280
[FTIT] metagenome; soil
2996
3071
+
Ile2
CAT
[ENA]
¢þ
>WENV180026422
FTIT01143575
[FTIT] metagenome; soil
91
166
+
Ile2
CAT
[ENA]
¢þ
>WENV180040846
LLBZ010017150
[LLBZ] soil metagenome; soil from tomato rhizosphere
83
8
-
Ile2
CAT
[ENA]
¢þ
>WENV180082769
MPMC02256470
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
8331
8256
-
Ile2
CAT
[ENA]
¢þ
>WENV180285083
OBID01217240
[OBID] metagenome; sludge
318
243
-
Ile2
CAT
[ENA]
¢þ
>WENV181222913
OFDC01000612
[OFDC] hot springs metagenome; Water
11376
11451
+
Ile2
CAT
[ENA]
¢þ
>WENV183793448
PVBE010013311
[PVBE] marine metagenome; water
116559
116484
-
Ile2
CAT
[ENA]
¢þ
>WENV170574064
FLYM01003052
[FLYM] hot springs metagenome; Sediment
2207
2132
-
Met
CAT
[ENA]
¢þ
>WENV171003309
NNBT01004196
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
143
68
-
Met
CAT
[ENA]
¢þ
>WENV171003396
NNBT01009391
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
194
269
+
Met
CAT
[ENA]
¢þ
>W141484993
JFZA02000015
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [JFZA]
38233
38308
+
Met
CAT
[ENA]
¡û
>C181081598
CP023449
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20 [CP023449]
2258330
2258405
+
Met
CAT
-
¡û
>W141779851
JOOE01000001
Alphaproteobacteria
Sphingomonas sp. UNC305MFCol5.2 [JOOE]
385510
385435
-
Met
CAT
[ENA]
¡û
>W1911411125
NWUF01000001
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20m [NWUF]
18182
18257
+
Met
CAT
[ENA]
¡û
>W1911719087
QQWW01000018
Alphaproteobacteria
Sphingomonas sp. ABOLG ABOLG S-NIH.Pt13_0512 [QQWW]
29781
29855
+
Met
CAT
[ENA]
¡û
>W1911802698
QYUM01000003
Alphaproteobacteria
Sphingomonas cavernae K2R01-6 [QYUM]
1496795
1496870
+
Met
CAT
[ENA]
¡û
>W1810107944
PHFW01000001
Alphaproteobacteria
Sphingopyxis lindanitolerans WS5A3p [PHFW]
115916
115991
+
Met
CAT
[ENA]
¡û
>SRA1019520
SRR035082.470593
454 Sequencing (SRP001803)
163
238
+
Met
CAT
[SRA]
>C151044375
CP009122
Alphaproteobacteria
Sphingopyxis fribergensis Kp5.2 [CP009122]
1815106
1815181
+
Met
CAT
[Ensembl]
¡û
>W1510013694
BBPI01000001
Alphaproteobacteria
Sphingomonas parapaucimobilis NBRC 15100 [BBPI]
89693
89768
+
Met
CAT
[ENA]
¡û
>W1511221191
JNFD01000001
Alphaproteobacteria
Sphingopyxis sp. LC81 [JNFD]
293012
293087
+
Met
CAT
[ENA]
¡û
>W1511587076
LAZX01000089
Alphaproteobacteria
Sphingomonas sp. Ag1 [LAZX]
55735
55660
-
Met
CAT
[ENA]
¡û
>C161003404
CP005188
Alphaproteobacteria
Sphingobium sp. MI1205 [CP005188, CP005189]
1554368
1554443
+
Met
CAT
[Ensembl]
¡û
>W1610071261
BCTY01000001
Alphaproteobacteria
Sphingomonas sanguinis NBRC 13937 [BCTY]
75254
75329
+
Met
CAT
[ENA]
¡û
>W1610076963
BCZD01000026
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
38105
38180
+
Met
CAT
[ENA]
¡û
>W1610592901
LDTC01000066
Alphaproteobacteria
Sphingomonas sanguinis [LDTC]
48954
48879
-
Met
CAT
[ENA]
¡û
>W1610592936
LDTD01000020
Alphaproteobacteria
Sphingomonas sanguinis [LDTD]
8612
8537
-
Met
CAT
[ENA]
¡û
>W1610592973
LDTE01000001
Alphaproteobacteria
Sphingomonas sanguinis [LDTE]
30280
30205
-
Met
CAT
[ENA]
¡û
>W1610593026
LDTF01000007
Alphaproteobacteria
Sphingomonas yabuuchiae [LDTF]
267938
267863
-
Met
CAT
[ENA]
¡û
>W1610724800
LMEJ01000016
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
847758
847833
+
Met
CAT
[ENA]
¡û
>W1610726252
LMFM01000002
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
110640
110715
+
Met
CAT
[ENA]
¡û
>W1610727369
LMGI01000003
Alphaproteobacteria
Sphingopyxis sp. Root154 [LMGI]
502593
502668
+
Met
CAT
[ENA]
¡û
>W1610729657
LMID01000016
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
34986
34911
-
Met
CAT
[ENA]
¡û
>W1610729779
LMIG01000005
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
502435
502510
+
Met
CAT
[ENA]
¡û
>W1610733468
LMLB01000001
Alphaproteobacteria
Sphingomonas sp. Leaf33 [LMLB]
1991429
1991504
+
Met
CAT
[ENA]
¡û
>W1610734406
LMLS01000001
Alphaproteobacteria
Sphingomonas sp. Leaf231 [LMLS]
38801
38876
+
Met
CAT
[ENA]
¡û
>W1610735177
LMMH01000023
Alphaproteobacteria
Sphingomonas sp. Leaf257 [LMMH]
20243
20168
-
Met
CAT
[ENA]
¡û
>W1610738835
LMPG01000014
Alphaproteobacteria
Sphingomonas sp. Leaf343 [LMPG]
7886
7811
-
Met
CAT
[ENA]
¡û
>W1610740383
LMQP01000003
Alphaproteobacteria
Sphingomonas sp. Leaf412 [LMQP]
1270086
1270161
+
Met
CAT
[ENA]
¡û
>W1610770873
LNRR01000004
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
352206
352281
+
Met
CAT
[ENA]
¡û
>W1610770925
LNRS01000003
Alphaproteobacteria
Sphingopyxis sp. H012 [LNRS]
123996
123921
-
Met
CAT
[ENA]
¡û
>W1610770963
LNRT01000002
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
36987
36912
-
Met
CAT
[ENA]
¡û
>W1610771016
LNRU01000005
Alphaproteobacteria
Sphingopyxis sp. H053 [LNRU]
123996
123921
-
Met
CAT
[ENA]
¡û
>W1610771052
LNRV01000006
Alphaproteobacteria
Sphingopyxis sp. H077 [LNRV]
24258
24183
-
Met
CAT
[ENA]
¡û
>W1610771107
LNRW01000008
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
24258
24183
-
Met
CAT
[ENA]
¡û
>W1610771152
LNRX01000007
Alphaproteobacteria
Sphingopyxis sp. H085 [LNRX]
24258
24183
-
Met
CAT
[ENA]
¡û
>W1610771187
LNRY01000005
Alphaproteobacteria
Sphingopyxis sp. H093 [LNRY]
173322
173397
+
Met
CAT
[ENA]
¡û
>W1610914621
LSKH01000244
Alphaproteobacteria
Sphingomonas sp. CCH5-D11 [LSKH]
62564
62489
-
Met
CAT
[ENA]
¡û
>W1710068626
BCTY01000001
Alphaproteobacteria
Sphingomonas sanguinis NBRC 13937 [BCTY]
75254
75329
+
Met
CAT
[ENA]
¡û
>W1710074652
BCZD01000026
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
38105
38180
+
Met
CAT
[ENA]
¡û
>W1710540045
FNWK01000002
Alphaproteobacteria
Sphingopyxis sp. YR583 [FNWK]
190995
191070
+
Met
CAT
[ENA]
¡û
>W1710542312
FNZB01000001
Alphaproteobacteria
Sphingomonas sp. OV641 [FNZB]
1521771
1521846
+
Met
CAT
[ENA]
¡û
>W1710543478
FNZZ01000006
Alphaproteobacteria
Sphingomonas palmae JS21-1 [FNZZ]
204171
204096
-
Met
CAT
[ENA]
¡û
>W1710712181
LDTC01000066
Alphaproteobacteria
Sphingomonas sanguinis [LDTC]
48954
48879
-
Met
CAT
[ENA]
¡û
>W1710712216
LDTD01000020
Alphaproteobacteria
Sphingomonas sanguinis [LDTD]
8612
8537
-
Met
CAT
[ENA]
¡û
>W1710712253
LDTE01000001
Alphaproteobacteria
Sphingomonas sanguinis [LDTE]
30280
30205
-
Met
CAT
[ENA]
¡û
>W1710712306
LDTF01000007
Alphaproteobacteria
Sphingomonas yabuuchiae [LDTF]
267938
267863
-
Met
CAT
[ENA]
¡û
>W1710743447
LGVA01000001
Alphaproteobacteria
Sphingomonas sp. Ndbn-20 [LGVA]
18105
18180
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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