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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45282 (130 seq.)
>W1711066630
LSCZ01000047
Actinomycetota
Corynebacterium sp. DNF00584 [LSCZ]
107788
107873
+
Leu
CAG
[ENA]
¡û
>W1711080534
LSRB01000032
Actinomycetota
Corynebacterium sp. CMW7794 [LSRB]
29802
29887
+
Leu
CAG
[ENA]
¡û
>W1711092421
LTEB01000041
Actinomycetota
Corynebacterium simulans [LTEB]
181435
181520
+
Leu
CAG
[ENA]
¡û
>W1711093746
LTFH01000007
Actinomycetota
Corynebacterium sp. HMSC062E11 HMSC062E11 [LTFH]
226
141
-
Leu
CAG
[ENA]
¡û
>W1711094357
LTFV01000069
Actinomycetota
Corynebacterium sp. HMSC078A10 [LTFV]
114849
114934
+
Leu
CAG
[ENA]
¡û
>W1711094394
LTFW01000072
Actinomycetota
Corynebacterium sp. HMSC074A09 HMSC074A09 [LTFW]
11296
11211
-
Leu
CAG
[ENA]
¡û
>W1711094447
LTFX01000078
Actinomycetota
Corynebacterium sp. HMSC076G08 HMSC076G08 [LTFX]
12125
12210
+
Leu
CAG
[ENA]
¡û
>W1711094956
LTGK01000044
Actinomycetota
Corynebacterium sp. HMSC068H04 HMSC068H04 [LTGK]
1055
970
-
Leu
CAG
[ENA]
¡û
>W1711095283
LTGR01000015
Actinomycetota
Corynebacterium sp. HMSC062A03 [LTGR]
1967
1882
-
Leu
CAG
[ENA]
¡û
>W1711095981
LTHJ01000002
Actinomycetota
Corynebacterium sp. HMSC065D07 [LTHJ]
5702
5617
-
Leu
CAG
[ENA]
¡û
>W1711096392
LTHS01000020
Actinomycetota
Corynebacterium sp. HMSC077B05 [LTHS]
11106
11021
-
Leu
CAG
[ENA]
¡û
>W1711096780
LTIB01000008
Actinomycetota
Corynebacterium sp. HMSC071F07 [LTIB]
9640
9555
-
Leu
CAG
[ENA]
¡û
>W1711097260
LTIM01000091
Actinomycetota
Corynebacterium sp. HMSC072A02 [LTIM]
2824
2739
-
Leu
CAG
[ENA]
¡û
>W1711098693
LTJU01000090
Actinomycetota
Corynebacterium sp. HMSC055A01 [LTJU]
2785
2700
-
Leu
CAG
[ENA]
¡û
>W1711098991
LTKC01000039
Actinomycetota
Corynebacterium sp. HMSC072A04 [LTKC]
25725
25810
+
Leu
CAG
[ENA]
¡û
>W1711099142
LTKF01000054
Actinomycetota
Corynebacterium sp. HMSC072G08 [LTKF]
1494
1409
-
Leu
CAG
[ENA]
¡û
>W1711099743
LTKS01000089
Actinomycetota
Corynebacterium sp. HMSC070E08 [LTKS]
11529
11614
+
Leu
CAG
[ENA]
¡û
>W1711099779
LTKT01000042
Actinomycetota
Corynebacterium sp. HMSC074E01 [LTKT]
94427
94512
+
Leu
CAG
[ENA]
¡û
>W1711106044
LTRK01000064
Actinomycetota
Corynebacterium sp. HMSC036D03 [LTRK]
65435
65520
+
Leu
CAG
[ENA]
¡û
>W1711106076
LTRL01000041
Actinomycetota
Corynebacterium sp. HMSC036D02 [LTRL]
129076
129161
+
Leu
CAG
[ENA]
¡û
>W1711106252
LTRQ01000111
Actinomycetota
Corynebacterium sp. HMSC035E02 [LTRQ]
11518
11603
+
Leu
CAG
[ENA]
¡û
>W1711106891
LTSH01000012
Actinomycetota
Corynebacterium sp. HMSC056F09 [LTSH]
50564
50649
+
Leu
CAG
[ENA]
¡û
>W1711108137
LTTL01000002
Actinomycetota
Corynebacterium sp. HMSC034H07 HMSC034H07 [LTTL]
2716
2631
-
Leu
CAG
[ENA]
¡û
>W1711108498
LTTU01000044
Actinomycetota
Corynebacterium sp. HMSC065A05 [LTTU]
105890
105975
+
Leu
CAG
[ENA]
¡û
>W1711108570
LTTW01000032
Actinomycetota
Corynebacterium sp. HMSC066C02 [LTTW]
99836
99921
+
Leu
CAG
[ENA]
¡û
>W1711108721
LTTZ01000092
Actinomycetota
Corynebacterium sp. HMSC068G04 [LTTZ]
53667
53582
-
Leu
CAG
[ENA]
¡û
>W1711109305
LTUN01000062
Actinomycetota
Corynebacterium sp. HMSC074C01 [LTUN]
156190
156275
+
Leu
CAG
[ENA]
¡û
>W1711109389
LTUP01000078
Actinomycetota
Corynebacterium sp. HMSC077D10 [LTUP]
49182
49267
+
Leu
CAG
[ENA]
¡û
>W1711109442
LTUR01000006
Actinomycetota
Corynebacterium sp. HMSC078C09 [LTUR]
25791
25876
+
Leu
CAG
[ENA]
¡û
>W1711109770
LTUY01000016
Actinomycetota
Corynebacterium sp. HMSC059E07 HMSC059E07 [LTUY]
1026
941
-
Leu
CAG
[ENA]
¡û
>W1711110603
LTVS01000008
Actinomycetota
Corynebacterium sp. HMSC072D12 [LTVS]
78648
78563
-
Leu
CAG
[ENA]
¡û
>W1711110841
LTVX01000080
Actinomycetota
Corynebacterium sp. HMSC076D02 [LTVX]
2878
2793
-
Leu
CAG
[ENA]
¡û
>W1711110966
LTWA01000063
Actinomycetota
Corynebacterium sp. HMSC074H12 [LTWA]
62558
62473
-
Leu
CAG
[ENA]
¡û
>W1711111637
LTWQ01000053
Actinomycetota
Corynebacterium sp. HMSC056E09 [LTWQ]
27933
28018
+
Leu
CAG
[ENA]
¡û
>W1711112372
LTXJ01000014
Actinomycetota
Corynebacterium sp. HMSC077D03 [LTXJ]
16018
15933
-
Leu
CAG
[ENA]
¡û
>W1711112850
LTXU01000003
Actinomycetota
Corynebacterium sp. HMSC078H07 [LTXU]
3564
3479
-
Leu
CAG
[ENA]
¡û
>W1711185960
LWNV01000017
Actinomycetota
Corynebacterium sp. HMSC08C04 [LWNV]
125409
125324
-
Leu
CAG
[ENA]
¡û
>W1711186273
LWOC01000012
Actinomycetota
Corynebacterium sp. HMSC06G04 [LWOC]
96666
96751
+
Leu
CAG
[ENA]
¡û
>W1711186401
LWOE01000047
Actinomycetota
Corynebacterium sp. HMSC06D04 [LWOE]
28429
28514
+
Leu
CAG
[ENA]
¡û
>W1711186415
LWOF01000012
Actinomycetota
Corynebacterium sp. HMSC06C06 [LWOF]
122
37
-
Leu
CAG
[ENA]
¡û
>W1711186590
LWOI01000068
Actinomycetota
Corynebacterium sp. HMSC05E07 [LWOI]
12075
12160
+
Leu
CAG
[ENA]
¡û
>W1711186651
LWOJ01000074
Actinomycetota
Corynebacterium sp. HMSC05D08 [LWOJ]
1775
1690
-
Leu
CAG
[ENA]
¡û
>W1711186675
LWOK01000015
Actinomycetota
Corynebacterium sp. HMSC05D03 [LWOK]
156204
156119
-
Leu
CAG
[ENA]
¡û
>W1711187670
LWPR01000010
Actinomycetota
Corynebacterium sp. HMSC04H06 [LWPR]
54275
54360
+
Leu
CAG
[ENA]
¡û
>W1711188254
LWQH01000001
Actinomycetota
Corynebacterium sp. HMSC069E04 [LWQH]
117
32
-
Leu
CAG
[ENA]
¡û
>W131215748
ATVG01000007
Actinomycetota
Corynebacterium massiliense DSM 45435 [ATVG]
27326
27413
+
Leu
CAG
[ENA]
¡û
>W1711281877
LZMN01000074
Actinomycetota
Corynebacterium sp. EPI-003-04-2554_SCH2473622 [LZMN]
26182
26269
+
Leu
CAG
[ENA]
¡û
>C171001908
CP009246
Actinomycetota
Corynebacterium flavescens OJ8 [CP009246]
50297
50384
+
Leu
CAG
-
¡û
>C171117464
CP021252
Actinomycetota
Corynebacterium striatum KC-Na-01 [CP021252]
158910
158825
-
Leu
CAG
-
¡û
>W131160901
AQXC01000003
Actinomycetota
Corynebacterium propinquum DSM 44285 [AQXC]
196896
196809
-
Leu
CAG
[ENA]
¡û
>WENV180228618
OBCD01001841
[OBCD] human skin metagenome; Infant 2 DOL 22 skin
836
921
+
Leu
CAG
[ENA]
¢þ
>WENV180711556
ODFP01001022
[ODFP] human metagenome; G_DNA_Anterior nares
376
461
+
Leu
CAG
[ENA]
¢þ
>WENV180732104
ODGX01000064
[ODGX] human metagenome; G_DNA_Anterior nares
7040
7125
+
Leu
CAG
[ENA]
¢þ
>WENV180875533
ODLS01000316
[ODLS] human metagenome; G_DNA_Anterior nares
86
1
-
Leu
CAG
[ENA]
¢þ
>WENV180878916
ODLY01002300
[ODLY] human metagenome; G_DNA_Anterior nares
587
502
-
Leu
CAG
[ENA]
¢þ
>WENV180916310
ODTC01002696
[ODTC] human metagenome; G_DNA_Anterior nares
793
878
+
Leu
CAG
[ENA]
¢þ
>W141096266
AVFF01000023
Actinomycetota
Corynebacterium pseudodiphtheriticum 90104 [AVFF]
30144
30057
-
Leu
CAG
[ENA]
¡û
>WENV181032223
ODXL01000379
[ODXL] human metagenome; G_DNA_Anterior nares
824
909
+
Leu
CAG
[ENA]
¢þ
>WENV181131482
OEGC01000553
[OEGC] human metagenome; G_DNA_Anterior nares
4002
4087
+
Leu
CAG
[ENA]
¢þ
>WENV181326361
OFLL01000148
[OFLL] metagenome; faeces
29663
29748
+
Leu
CAG
[ENA]
¢þ
>W141155025
AXLQ01000002
Actinomycetota
Corynebacterium sp. KPL1995 [AXLQ]
105332
105245
-
Leu
CAG
[ENA]
¡û
>W141155071
AXLR01000002
Actinomycetota
Corynebacterium sp. KPL1989 [AXLR]
37944
37857
-
Leu
CAG
[ENA]
¡û
>WENV182629395
OJKS01001274
[OJKS] metagenome; surface
157
72
-
Leu
CAG
[ENA]
¢þ
>WENV182636491
OJKZ01009702
[OJKZ] metagenome; surface
1626
1711
+
Leu
CAG
[ENA]
¢þ
>WENV182640311
OJLB01002480
[OJLB] metagenome; surface
976
891
-
Leu
CAG
[ENA]
¢þ
>WENV182641842
OJLK01002842
[OJLK] metagenome; surface
1015
1100
+
Leu
CAG
[ENA]
¢þ
>WENV182641991
OJLL01000131
[OJLL] metagenome; surface
686
601
-
Leu
CAG
[ENA]
¢þ
>WENV182643328
OJLU01001117
[OJLU] metagenome; surface
1020
933
-
Leu
CAG
[ENA]
¢þ
>WENV182644002
OJLW01004807
[OJLW] metagenome; surface
975
1060
+
Leu
CAG
[ENA]
¢þ
>WENV182645350
OJLY01011420
[OJLY] metagenome; surface
97
12
-
Leu
CAG
[ENA]
¢þ
>WENV182645906
OJLZ01008779
[OJLZ] metagenome; surface
1437
1522
+
Leu
CAG
[ENA]
¢þ
>WENV182646405
OJMA01017221
[OJMA] metagenome; surface
769
854
+
Leu
CAG
[ENA]
¢þ
>WENV182646574
OJMC01000003
[OJMC] metagenome; surface
128163
128248
+
Leu
CAG
[ENA]
¢þ
>WENV182671722
OJNM01001663
[OJNM] metagenome; surface
664
579
-
Leu
CAG
[ENA]
¢þ
>WENV182818895
OJZZ01000540
[OJZZ] human gut metagenome; human gut
684
769
+
Leu
CAG
[ENA]
¢þ
>WENV182835384
OKFN01000009
[OKFN] human gut metagenome; human gut
236
151
-
Leu
CAG
[ENA]
¢þ
>WENV182835826
OKFR01000167
[OKFR] human gut metagenome; human gut
1777
1692
-
Leu
CAG
[ENA]
¢þ
>C181108796
CP024931
Actinomycetota
Corynebacterium striatum 215 [CP024931]
2239952
2239867
-
Leu
CAG
-
¡û
>C181108833
CP024932
Actinomycetota
Corynebacterium striatum 216 [CP024932]
2151383
2151468
+
Leu
CAG
-
¡û
>C181144736
CP027001
Actinomycetota
Corynebacterium camporealensis CIP 105508 [CP027001]
46645
46732
+
Leu
CAG
-
¡û
>C181214819
LS483460
Actinomycetota
Corynebacterium minutissimum NCTC10288 [LS483460]
2656035
2655950
-
Leu
CAG
-
¡û
>C191163625
CP039247
Actinomycetota
Corynebacterium endometrii LMM-1653 [CP039247]
48148
48233
+
Leu
CAG
-
¡û
>C191207650
LR134339
Actinomycetota
Corynebacterium minutissimum NCTC10285 [LR134339]
277012
277097
+
Leu
CAG
-
¡û
>W141563867
JIAH01000009
Actinomycetota
Corynebacterium pseudodiphtheriticum DSM 44287 [JIAH]
187501
187588
+
Leu
CAG
[ENA]
¡û
>W09122457
ACGE01000133
Actinomycetota
Corynebacterium striatum ATCC 6940 [ACGE]
11109
11024
-
Leu
CAG
[ENA]
¡û
>W09127834
ACLH01000031
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 [ACLH]
24608
24693
+
Leu
CAG
[ENA]
¡û
>W1910180425
BJLD01000001
Actinomycetota
Corynebacterium striatum NBRC 15291 [BJLD]
628574
628489
-
Leu
CAG
[ENA]
¡û
>W1910182651
BJNB01000049
Actinomycetota
Corynebacterium flavescens NBRC 14136 [BJNB]
17435
17520
+
Leu
CAG
[ENA]
¡û
>C09102721
CP001601
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 DSM 44827; ATCC 700975 [CP001601]
38712
38797
+
Leu
CAG
[Ensembl]
¡û
>W1910598647
LBCN01000001
Actinomycetota
Corynebacterium striatum 2023 [LBCN]
47728
47643
-
Leu
CAG
[ENA]
¡û
>W1910640606
LTBE01000032
Actinomycetota
Corynebacterium striatum 2023 [LTBE]
4805
4720
-
Leu
CAG
[ENA]
¡û
>W1910640624
LTBF01000004
Actinomycetota
Corynebacterium striatum 2230 [LTBF]
18882
18797
-
Leu
CAG
[ENA]
¡û
>W1910640709
LTBH01000002
Actinomycetota
Corynebacterium striatum 2247 [LTBH]
107213
107298
+
Leu
CAG
[ENA]
¡û
>W1911204338
NRIL01000002
Actinomycetota
Corynebacterium striatum 2130 [NRIL]
11543
11458
-
Leu
CAG
[ENA]
¡û
>W1911204402
NRIM01000002
Actinomycetota
Corynebacterium striatum 2237 [NRIM]
13045
12960
-
Leu
CAG
[ENA]
¡û
>W1911204457
NRIM01000053
Actinomycetota
Corynebacterium striatum 2237 [NRIM]
14686
14601
-
Leu
CAG
[ENA]
¡û
>W1911204465
NRIN01000001
Actinomycetota
Corynebacterium striatum 2296 [NRIN]
14945
14860
-
Leu
CAG
[ENA]
¡û
>W1911204524
NRIO01000004
Actinomycetota
Corynebacterium striatum 2308 [NRIO]
6347
6262
-
Leu
CAG
[ENA]
¡û
>W1911204592
NRIP01000002
Actinomycetota
Corynebacterium striatum 2425 [NRIP]
15044
14959
-
Leu
CAG
[ENA]
¡û
>W1911390859
NWBP01000010
Actinomycetota
Corynebacterium accolens AH4003 [NWBP]
176235
176320
+
Leu
CAG
[ENA]
¡û
>W1911596661
PNHI01000009
Actinomycetota
Corynebacterium aurimucosum UMB1300 [PNHI]
529
444
-
Leu
CAG
[ENA]
¡û
>W1810187583
PKHR01000009
Actinomycetota
Corynebacterium aurimucosum UMB0043 [PKHR]
198
113
-
Leu
CAG
[ENA]
¡û
>C151073102
CP010827
Actinomycetota
Corynebacterium singulare IBS B52218 [CP010827]
39817
39904
+
Leu
CAG
[Ensembl]
¡û
>C151079690
CP011311
Actinomycetota
Corynebacterium camporealensis DSM 44610 [CP011311]
46651
46738
+
Leu
CAG
[Ensembl]
¡û
>W1510562549
CTEG01000021
Actinomycetota
Corynebacterium striatum BM4687 [CTEG]
98043
98128
+
Leu
CAG
[ENA]
¡û
>W1511356304
JRUB01000004
Actinomycetota
Corynebacterium camporealensis CIP 105508 [JRUB]
135559
135472
-
Leu
CAG
[ENA]
¡û
>W1511365530
JSEF01000004
Actinomycetota
Corynebacterium minutissimum ATCC 23348 [JSEF]
154852
154937
+
Leu
CAG
[ENA]
¡û
>W1511438062
JULV01000094
Actinomycetota
Corynebacterium striatum 963_CAUR [JULV]
25145
25230
+
Leu
CAG
[ENA]
¡û
>W1511438123
JULW01000093
Actinomycetota
Corynebacterium striatum 962_CAUR [JULW]
12737
12652
-
Leu
CAG
[ENA]
¡û
>W1511438564
JUMN01000088
Actinomycetota
Corynebacterium aurimucosum 945_CAUR [JUMN]
22992
23077
+
Leu
CAG
[ENA]
¡û
>W1511443064
JUSN01000041
Actinomycetota
Corynebacterium striatum 797_CAUR [JUSN]
13195
13110
-
Leu
CAG
[ENA]
¡û
>W1511449445
JVBA01000064
Actinomycetota
Corynebacterium striatum 587_CAUR [JVBA]
25129
25214
+
Leu
CAG
[ENA]
¡û
>W1511451277
JVCW01000036
Actinomycetota
Corynebacterium striatum 542_CAUR [JVCW]
120800
120887
+
Leu
CAG
[ENA]
¡û
>W1511466808
JVSI01000050
Actinomycetota
Corynebacterium propinquum 149_CJEI [JVSI]
34760
34845
+
Leu
CAG
[ENA]
¡û
>W1511467016
JVSN01000035
Actinomycetota
Corynebacterium propinquum 143_CAUR [JVSN]
52186
52101
-
Leu
CAG
[ENA]
¡û
>W1511467828
JVTL01000028
Actinomycetota
Corynebacterium striatum 1329_CAUR [JVTL]
12737
12652
-
Leu
CAG
[ENA]
¡û
>W1511467941
JVTN01000059
Actinomycetota
Corynebacterium striatum 1327_CAUR [JVTN]
1566
1481
-
Leu
CAG
[ENA]
¡û
>W1511469874
JVVY01000054
Actinomycetota
Corynebacterium propinquum 1274_CJEI [JVVY]
45861
45774
-
Leu
CAG
[ENA]
¡û
>W1511585530
LAYQ01000018
Actinomycetota
Corynebacterium minutissimum 1941 [LAYQ]
32136
32051
-
Leu
CAG
[ENA]
¡û
>W1511585600
LAYR01000016
Actinomycetota
Corynebacterium striatum 1961 [LAYR]
11734
11819
+
Leu
CAG
[ENA]
¡û
>C161074805
CP014634
Actinomycetota
Corynebacterium simulans PES1 [CP014634]
1424715
1424630
-
Leu
CAG
[Ensembl]
¡û
>C161074855
CP014635
Actinomycetota
Corynebacterium simulans Wattiau [CP014635]
1516335
1516250
-
Leu
CAG
-
¡û
>W1610068149
BCRC01000005
Actinomycetota
Corynebacterium minutissimum NBRC 15361 [BCRC]
57113
57198
+
Leu
CAG
[ENA]
¡û
>W1610507466
FLTI01000014
Actinomycetota
Corynebacterium phoceense MC1 [FLTI]
103194
103109
-
Leu
CAG
[ENA]
¡û
>W1610907200
LSCZ01000047
Actinomycetota
Corynebacterium sp. DNF00584 [LSCZ]
107788
107873
+
Leu
CAG
[ENA]
¡û
>W1610919401
LSRB01000032
Actinomycetota
Corynebacterium sp. CMW7794 [LSRB]
29802
29887
+
Leu
CAG
[ENA]
¡û
>W1610926459
LTEB01000041
Actinomycetota
Corynebacterium simulans [LTEB]
181435
181520
+
Leu
CAG
[ENA]
¡û
>W1611041162
LZMN01000074
Actinomycetota
Corynebacterium sp. EPI-003-04-2554_SCH2473622 [LZMN]
26182
26269
+
Leu
CAG
[ENA]
¡û
>W1710065522
BCRC01000005
Actinomycetota
Corynebacterium minutissimum NBRC 15361 [BCRC]
57113
57198
+
Leu
CAG
[ENA]
¡û
>W1710499684
FLTI01000014
Actinomycetota
Corynebacterium phoceense MC1 [FLTI]
103194
103109
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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