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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45283 (45 seq.)
>W1711092371
LTEB01000009
Actinomycetota
Corynebacterium simulans [LTEB]
58130
58217
+
Ser
TGA
[ENA]
¡û
>W1711096788
LTIB01000019
Actinomycetota
Corynebacterium sp. HMSC071F07 [LTIB]
2474
2387
-
Ser
TGA
[ENA]
¡û
>W1711106045
LTRK01000064
Actinomycetota
Corynebacterium sp. HMSC036D03 [LTRK]
140301
140388
+
Ser
TGA
[ENA]
¡û
>W1711110847
LTVX01000097
Actinomycetota
Corynebacterium sp. HMSC076D02 [LTVX]
28231
28318
+
Ser
TGA
[ENA]
¡û
>W1711112365
LTXJ01000013
Actinomycetota
Corynebacterium sp. HMSC077D03 [LTXJ]
92308
92221
-
Ser
TGA
[ENA]
¡û
>W131164498
ARAV01000003
Actinomycetota
Corynebacterium lubricantis DSM 45231 [ARAV]
181585
181672
+
Ser
TGA
[ENA]
¡û
>W1711185961
LWNV01000017
Actinomycetota
Corynebacterium sp. HMSC08C04 [LWNV]
52795
52708
-
Ser
TGA
[ENA]
¡û
>W1711186275
LWOC01000021
Actinomycetota
Corynebacterium sp. HMSC06G04 [LWOC]
78029
78116
+
Ser
TGA
[ENA]
¡û
>W1711186402
LWOE01000047
Actinomycetota
Corynebacterium sp. HMSC06D04 [LWOE]
101072
101159
+
Ser
TGA
[ENA]
¡û
>W1711186456
LWOF01000082
Actinomycetota
Corynebacterium sp. HMSC06C06 [LWOF]
61503
61590
+
Ser
TGA
[ENA]
¡û
>W1711186632
LWOJ01000047
Actinomycetota
Corynebacterium sp. HMSC05D08 [LWOJ]
78744
78831
+
Ser
TGA
[ENA]
¡û
>C171117465
CP021252
Actinomycetota
Corynebacterium striatum KC-Na-01 [CP021252]
45893
45806
-
Ser
TGA
-
¡û
>WENV182623795
OJKN01006604
[OJKN] metagenome; surface
465
380
-
Ser
TGA
[ENA]
¢þ
>WENV182629517
OJKS01022112
[OJKS] metagenome; surface
273
187
-
Ser
TGA
[ENA]
¢þ
>WENV182645532
OJLY01043268
[OJLY] metagenome; surface
64
150
+
Ser
TGA
[ENA]
¢þ
>WENV182646589
OJMC01000010
[OJMC] metagenome; surface
13423
13337
-
Ser
TGA
[ENA]
¢þ
>WENV182835366
OKFN01000004
[OKFN] human gut metagenome; human gut
75336
75422
+
Ser
TGA
[ENA]
¢þ
>WENV182835824
OKFR01000112
[OKFR] human gut metagenome; human gut
4427
4513
+
Ser
TGA
[ENA]
¢þ
>C181108797
CP024931
Actinomycetota
Corynebacterium striatum 215 [CP024931]
2132828
2132742
-
Ser
TGA
-
¡û
>C181108834
CP024932
Actinomycetota
Corynebacterium striatum 216 [CP024932]
2263367
2263453
+
Ser
TGA
-
¡û
>W09122453
ACGE01000132
Actinomycetota
Corynebacterium striatum ATCC 6940 [ACGE]
76388
76301
-
Ser
TGA
[ENA]
¡û
>W1910180426
BJLD01000001
Actinomycetota
Corynebacterium striatum NBRC 15291 [BJLD]
540811
540725
-
Ser
TGA
[ENA]
¡û
>W1910598663
LBCN01000009
Actinomycetota
Corynebacterium striatum 2023 [LBCN]
44050
44136
+
Ser
TGA
[ENA]
¡û
>W1910640578
LTBE01000007
Actinomycetota
Corynebacterium striatum 2023 [LTBE]
23072
22986
-
Ser
TGA
[ENA]
¡û
>W1910640617
LTBF01000004
Actinomycetota
Corynebacterium striatum 2230 [LTBF]
274502
274588
+
Ser
TGA
[ENA]
¡û
>W1910640749
LTBH01000019
Actinomycetota
Corynebacterium striatum 2247 [LTBH]
65834
65748
-
Ser
TGA
[ENA]
¡û
>W1911204388
NRIL01000028
Actinomycetota
Corynebacterium striatum 2130 [NRIL]
120577
120491
-
Ser
TGA
[ENA]
¡û
>W1911204444
NRIM01000027
Actinomycetota
Corynebacterium striatum 2237 [NRIM]
101838
101752
-
Ser
TGA
[ENA]
¡û
>W1911204510
NRIN01000032
Actinomycetota
Corynebacterium striatum 2296 [NRIN]
23142
23056
-
Ser
TGA
[ENA]
¡û
>W1911204516
NRIO01000001
Actinomycetota
Corynebacterium striatum 2308 [NRIO]
23132
23046
-
Ser
TGA
[ENA]
¡û
>W1911204641
NRIP01000034
Actinomycetota
Corynebacterium striatum 2425 [NRIP]
23140
23054
-
Ser
TGA
[ENA]
¡û
>W1911390865
NWBP01000020
Actinomycetota
Corynebacterium accolens AH4003 [NWBP]
58971
59057
+
Ser
TGA
[ENA]
¡û
>C151084425
CP011545
Actinomycetota
Corynebacterium testudinoris DSM 44614 [CP011545]
160391
160478
+
Ser
TGA
[Ensembl]
¡û
>W1510562578
CTEG01000057
Actinomycetota
Corynebacterium striatum BM4687 [CTEG]
64810
64723
-
Ser
TGA
[ENA]
¡û
>W1511438082
JULV01000146
Actinomycetota
Corynebacterium striatum 963_CAUR [JULV]
70426
70513
+
Ser
TGA
[ENA]
¡û
>W1511438114
JULW01000067
Actinomycetota
Corynebacterium striatum 962_CAUR [JULW]
68701
68788
+
Ser
TGA
[ENA]
¡û
>W1511443092
JUSN01000104
Actinomycetota
Corynebacterium striatum 797_CAUR [JUSN]
55521
55434
-
Ser
TGA
[ENA]
¡û
>W1511449449
JVBA01000090
Actinomycetota
Corynebacterium striatum 587_CAUR [JVBA]
27378
27291
-
Ser
TGA
[ENA]
¡û
>W1511451258
JVCW01000022
Actinomycetota
Corynebacterium striatum 542_CAUR [JVCW]
87441
87354
-
Ser
TGA
[ENA]
¡û
>W1511467847
JVTL01000049
Actinomycetota
Corynebacterium striatum 1329_CAUR [JVTL]
79064
79151
+
Ser
TGA
[ENA]
¡û
>W1511467913
JVTN01000033
Actinomycetota
Corynebacterium striatum 1327_CAUR [JVTN]
22963
23050
+
Ser
TGA
[ENA]
¡û
>W1511585573
LAYR01000004
Actinomycetota
Corynebacterium striatum 1961 [LAYR]
199920
199833
-
Ser
TGA
[ENA]
¡û
>C161074806
CP014634
Actinomycetota
Corynebacterium simulans PES1 [CP014634]
1278543
1278456
-
Ser
TGA
[Ensembl]
¡û
>C161074856
CP014635
Actinomycetota
Corynebacterium simulans Wattiau [CP014635]
1428159
1428072
-
Ser
TGA
-
¡û
>W1610926409
LTEB01000009
Actinomycetota
Corynebacterium simulans [LTEB]
58130
58217
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK