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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452882 (65 seq.)
>W1711353530
MDER01000067
Bacillota
Paenibacillus nuruki TI45-13ar [MDER]
726
801
+
Val
TAC
[ENA]
¡û
>C171118990
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
1722945
1723020
+
Val
TAC
-
¡û
>C171119008
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
1829234
1829309
+
Val
TAC
-
¡û
>C171119019
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
1842032
1842107
+
Val
TAC
-
¡û
>C171119053
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
2861546
2861621
+
Val
TAC
-
¡û
>C171119060
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
2887529
2887604
+
Val
TAC
-
¡û
>C171119081
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3261891
3261966
+
Val
TAC
-
¡û
>C171119090
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3262824
3262899
+
Val
TAC
-
¡û
>C171119110
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3315807
3315882
+
Val
TAC
-
¡û
>C171119136
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3818153
3818228
+
Val
TAC
-
¡û
>C171119161
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
61338
61263
-
Val
TAC
-
¡û
>C171119175
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
19016
18941
-
Val
TAC
-
¡û
>W08004205
ABHH01000018
Bacillota
Carnobacterium sp. AT7 [ABHH]
46777
46705
-
Val
TAC
[ENA]
¡û
>W08004242
ABHH01000043
Bacillota
Carnobacterium sp. AT7 [ABHH]
7803
7731
-
Val
TAC
[ENA]
¡û
>W08004253
ABHH01000050
Bacillota
Carnobacterium sp. AT7 [ABHH]
7138
7066
-
Val
TAC
[ENA]
¡û
>W141426039
JEMH01000023
Bacillota
Carnobacterium jeotgali [JEMH]
985
913
-
Val
TAC
[ENA]
¡û
>WENV170640535
JFJP01021918
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
1837
1912
+
Val
TAC
[ENA]
¢þ
>WENV170685090
LFRM01072973
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
4595
4523
-
Val
TAC
[ENA]
¢þ
>WENV170700123
LIDZ01003015
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
1002
930
-
Val
TAC
[ENA]
¢þ
>WENV170700254
LIDZ01009968
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
6335
6260
-
Val
TAC
[ENA]
¢þ
>C181070218
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
1290818
1290893
+
Val
TAC
-
¡û
>C181070232
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
1342567
1342642
+
Val
TAC
-
¡û
>C181070268
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
4429378
4429303
-
Val
TAC
-
¡û
>C181070284
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
4328667
4328592
-
Val
TAC
-
¡û
>C181070295
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
4319178
4319103
-
Val
TAC
-
¡û
>C181070321
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
3452271
3452196
-
Val
TAC
-
¡û
>C181070343
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
3148775
3148700
-
Val
TAC
-
¡û
>C181070353
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
3147706
3147631
-
Val
TAC
-
¡û
>C181070384
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
2608000
2607925
-
Val
TAC
-
¡û
>W141815467
JQIV01000006
Bacillota
Carnobacterium inhibens DSM 13024 [JQIV]
1913649
1913724
+
Val
TAC
[ENA]
¡û
>W141815484
JQIV01000006
Bacillota
Carnobacterium inhibens DSM 13024 [JQIV]
2260789
2260864
+
Val
TAC
[ENA]
¡û
>W141815513
JQIV01000006
Bacillota
Carnobacterium inhibens DSM 13024 [JQIV]
594801
594729
-
Val
TAC
[ENA]
¡û
>W141815525
JQIV01000006
Bacillota
Carnobacterium inhibens DSM 13024 [JQIV]
581693
581621
-
Val
TAC
[ENA]
¡û
>W141818056
JQLG01000004
Bacillota
Carnobacterium alterfunditum DSM 5972 [JQLG]
1269873
1269948
+
Val
TAC
[ENA]
¡û
>W141818073
JQLG01000004
Bacillota
Carnobacterium alterfunditum DSM 5972 [JQLG]
1618627
1618702
+
Val
TAC
[ENA]
¡û
>W141818326
JQLL01000001
Bacillota
Carnobacterium funditum DSM 5970 [JQLL]
319880
319952
+
Val
TAC
[ENA]
¡û
>W141818340
JQLL01000001
Bacillota
Carnobacterium funditum DSM 5970 [JQLL]
1449611
1449536
-
Val
TAC
[ENA]
¡û
>W141818357
JQLL01000001
Bacillota
Carnobacterium funditum DSM 5970 [JQLL]
1068891
1068816
-
Val
TAC
[ENA]
¡û
>W141818387
JQLL01000001
Bacillota
Carnobacterium funditum DSM 5970 [JQLL]
619123
619051
-
Val
TAC
[ENA]
¡û
>W141820912
JQNF01000003
Bacillota
Carnobacterium jeotgali MS3 [JQNF]
136446
136374
-
Val
TAC
[ENA]
¡û
>W141820924
JQNF01000003
Bacillota
Carnobacterium jeotgali MS3 [JQNF]
121774
121702
-
Val
TAC
[ENA]
¡û
>W141820944
JQNF01000007
Bacillota
Carnobacterium jeotgali MS3 [JQNF]
57771
57696
-
Val
TAC
[ENA]
¡û
>W141820972
JQNF01000010
Bacillota
Carnobacterium jeotgali MS3 [JQNF]
848503
848578
+
Val
TAC
[ENA]
¡û
>W141820985
JQNG01000002
Bacillota
Carnobacterium sp. WN1374 [JQNG]
900899
900974
+
Val
TAC
[ENA]
¡û
>W141821002
JQNG01000002
Bacillota
Carnobacterium sp. WN1374 [JQNG]
1219350
1219425
+
Val
TAC
[ENA]
¡û
>W141821032
JQNG01000002
Bacillota
Carnobacterium sp. WN1374 [JQNG]
2067449
2067377
-
Val
TAC
[ENA]
¡û
>W141821044
JQNG01000002
Bacillota
Carnobacterium sp. WN1374 [JQNG]
2058254
2058182
-
Val
TAC
[ENA]
¡û
>C141008713
CP006812
Bacillota
Carnobacterium inhibens subsp. gilichinskyi WN1359 [CP006812]
148632
148707
+
Val
TAC
[Ensembl]
¡û
>C141008730
CP006812
Bacillota
Carnobacterium inhibens subsp. gilichinskyi WN1359 [CP006812]
467024
467099
+
Val
TAC
[Ensembl]
¡û
>C141008761
CP006812
Bacillota
Carnobacterium inhibens subsp. gilichinskyi WN1359 [CP006812]
1301550
1301478
-
Val
TAC
[Ensembl]
¡û
>C141008773
CP006812
Bacillota
Carnobacterium inhibens subsp. gilichinskyi WN1359 [CP006812]
1288441
1288369
-
Val
TAC
[Ensembl]
¡û
>W1911671512
QGAD01000008
Bacillota
Paenibacillus sp. CFBP13512 [QGAD]
242035
241960
-
Val
TAC
[ENA]
¡û
>C11104747
CP002563
Bacillota
Carnobacterium sp. 17-4 [CP002563]
225298
225373
+
Val
TAC
[Ensembl]
¡û
>C11104764
CP002563
Bacillota
Carnobacterium sp. 17-4 [CP002563]
556726
556801
+
Val
TAC
[Ensembl]
¡û
>C11104788
CP002563
Bacillota
Carnobacterium sp. 17-4 [CP002563]
1412552
1412480
-
Val
TAC
[Ensembl]
¡û
>C11104800
CP002563
Bacillota
Carnobacterium sp. 17-4 [CP002563]
1399600
1399528
-
Val
TAC
[Ensembl]
¡û
>W1710525899
FNJW01000008
Bacillota
Carnobacterium viridans [FNJW]
1764270
1764345
+
Val
TAC
[ENA]
¡û
>W1710525916
FNJW01000008
Bacillota
Carnobacterium viridans [FNJW]
2086214
2086289
+
Val
TAC
[ENA]
¡û
>W1710525945
FNJW01000008
Bacillota
Carnobacterium viridans [FNJW]
521213
521141
-
Val
TAC
[ENA]
¡û
>W1710543766
FOAH01000008
Bacillota
Carnobacterium iners [FOAH]
80767
80693
-
Val
TAC
[ENA]
¡û
>W1710594854
FSRN01000001
Bacillota
Carnobacterium alterfunditum [FSRN]
612432
612507
+
Val
TAC
[ENA]
¡û
>W1710594871
FSRN01000001
Bacillota
Carnobacterium alterfunditum [FSRN]
961186
961261
+
Val
TAC
[ENA]
¡û
>W1710608723
FXBJ01000002
Bacillota
Carnobacterium iners [FXBJ]
1795753
1795827
+
Val
TAC
[ENA]
¡û
>W1710608737
FXBJ01000002
Bacillota
Carnobacterium iners [FXBJ]
2099446
2099372
-
Val
TAC
[ENA]
¡û
>W1710608749
FXBJ01000002
Bacillota
Carnobacterium iners [FXBJ]
483444
483369
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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