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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.453013 (23 seq.)
>W1711421819
MHZW01000048
Betaproteobacteria
Rhodocyclales bacterium GWA2_65_20 [MHZW]
5884
5957
+
Gly
CCC
[ENA]
¡û
>WENV181170324
OEIV010037290
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1136
1209
+
Gly
CCC
[ENA]
¡û
>WENV181170937
OEIV010115196
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
366
439
+
Gly
CCC
[ENA]
¡û
>WENV181414479
OGCL01000464
[OGCL] hot springs metagenome; Hot spring water
9719
9792
+
Gly
CCC
[ENA]
¡û
>WENV183675098
ORJL011471672
[ORJL] groundwater metagenome; groundwater
889
816
-
Gly
CCC
[ENA]
¡û
>WENV183675163
ORJL011480015
[ORJL] groundwater metagenome; groundwater
873
946
+
Gly
CCC
[ENA]
¡û
>WENV183680912
ORMF010237408
[ORMF] groundwater metagenome; groundwater
25562
25489
-
Gly
CCC
[ENA]
¡û
>WENV170566494
FKKE01037193
[FKKE] freshwater metagenome; freshwater
744
817
+
Gly
CCC
[ENA]
¡û
>WENV170578122
FSSH01024714
[FSSH] freshwater metagenome; drinking water
82
155
+
Gly
CCC
[ENA]
¡û
>WENV170659726
JXWR01050639
[JXWR] soil metagenome; rice field; ambient CO2
127
200
+
Gly
CCC
[ENA]
¡û
>WENV170705386
LNAO01000025
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1980
2053
+
Gly
CCC
[ENA]
¡û
>WENV170706595
LNAP01004491
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
5414
5487
+
Gly
CCC
[ENA]
¡û
>C181060424
CP022187
Betaproteobacteria
Parazoarcus communis TSPY31 [CP022187]
3926014
3925941
-
Gly
CCC
-
¡û
>C181060498
CP022188
Betaproteobacteria
Parazoarcus communis TSNA42 [CP022188]
2103522
2103449
-
Gly
CCC
-
¡û
>C191022900
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
4985561
4985634
+
Gly
CCC
-
¡û
>C151071203
CP010554
Betaproteobacteria
Rugosibacter aromaticivorans Ca6 [CP010554]
2883031
2882958
-
Gly
CCC
[Ensembl]
¡û
>W2010940616
NCXS01000002
Betaproteobacteria
Denitratisoma oestradiolicum DSM 16959 [NCXS]
88899
88972
+
Gly
CCC
[ENA]
¡û
>W2011647078
SNVV01000011
Betaproteobacteria
Azoarcus indigens DSM 12121 [SNVV]
59676
59603
-
Gly
CCC
[ENA]
¡û
>W2012232222
WBSG01000004
Betaproteobacteria
Betaproteobacteria bacterium SCN2 [WBSG]
181181
181108
-
Gly
CCC
[ENA]
¡û
>W2012438078
WTVL01000010
Betaproteobacteria
Azoarcus indigens VB32 [WTVL]
72158
72231
+
Gly
CCC
[ENA]
¡û
>W2012442098
WUEI01000020
Betaproteobacteria
Azoarcus sp. TTM-91 [WUEI]
15282
15355
+
Gly
CCC
[ENA]
¡û
>W2110568427
JAGRRD010000001
Betaproteobacteria
Azoarcus sp. L1K30 [JAGRRD]
2535729
2535802
+
Gly
CCC
[ENA]
¡û
>C211409425
LR778301
Betaproteobacteria
Denitratisoma oestradiolicum DSM16959 [LR778301]
3581818
3581891
+
Gly
CCC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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