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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.453256 (101 seq.)
>W1710860179
LMCR01000012
Alphaproteobacteria
Devosia sp. Root105 [LMCR]
824450
824523
+
Gln
CTG
[ENA]
¡û
>W1710861953
LMEA01000008
Alphaproteobacteria
Devosia sp. Root413D1 [LMEA]
442503
442430
-
Gln
CTG
[ENA]
¡û
>W1710862572
LMEM01000004
Alphaproteobacteria
Devosia sp. Root436 [LMEM]
25173
25246
+
Gln
CTG
[ENA]
¡û
>W131166835
ARCT01000002
Alphaproteobacteria
Methylocystis rosea SV97 [ARCT]
1558743
1558670
-
Gln
CTG
[ENA]
¡û
>W131166843
ARCT01000004
Alphaproteobacteria
Methylocystis rosea SV97 [ARCT]
254729
254656
-
Gln
CTG
[ENA]
¡û
>W1711228845
LXWX01000069
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
27668
27595
-
Gln
CTG
[ENA]
¡û
>W1711385168
MEDU01000116
Alphaproteobacteria
Devosia sp. SCN 66-27 [MEDU]
10129
10202
+
Gln
CTG
[ENA]
¡û
>W1711504883
MKUZ01000017
Alphaproteobacteria
Devosia sp. 66-22 [MKUZ]
354715
354788
+
Gln
CTG
[ENA]
¡û
>W1711504975
MKVB01000006
Alphaproteobacteria
Devosia sp. 66-14 [MKVB]
301713
301786
+
Gln
CTG
[ENA]
¡û
>C171101480
CP019948
Alphaproteobacteria
Methylocystis bryophila S285 [CP019948]
3188804
3188877
+
Gln
CTG
-
¡û
>WENV180015721
FSTB01000193
[FSTB] metagenome; soil
7022
7095
+
Gln
CTG
[ENA]
¡û
>WENV180029222
FTJI01221838
[FTJI] metagenome; soil
455
382
-
Gln
CTG
[ENA]
¡û
>WENV180033493
FTKK01082587
[FTKK] metagenome; soil
75
148
+
Gln
CTG
[ENA]
¡û
>WENV180034762
FTKR01248334
[FTKR] metagenome; soil
455
382
-
Gln
CTG
[ENA]
¡û
>WENV180099414
NMRC01002777
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
415
488
+
Gln
CTG
[ENA]
¡û
>WENV180262872
OBEQ011423565
[OBEQ] groundwater metagenome; groundwater
2124
2051
-
Gln
CTG
[ENA]
¡û
>WENV180292930
OBIV01716282
[OBIV] soil metagenome; Clay
110
183
+
Gln
CTG
[ENA]
¡û
>W08008856
ABLP01000010
Alphaproteobacteria
Methylocella silvestris BL2 [ABLP]
13728
13801
+
Gln
CTG
[ENA]
¡û
>WENV181168451
OEIU01369666
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
66
139
+
Gln
CTG
[ENA]
¡û
>WENV181307890
OFIS01000019
[OFIS] sludge metagenome; sludge
248135
248062
-
Gln
CTG
[ENA]
¡û
>WENV181308047
OFIS01000155
[OFIS] sludge metagenome; sludge
13840
13913
+
Gln
CTG
[ENA]
¡û
>WENV181308180
OFIS01000476
[OFIS] sludge metagenome; sludge
76
3
-
Gln
CTG
[ENA]
¡û
>WENV181308380
OFIS01009255
[OFIS] sludge metagenome; sludge
2
75
+
Gln
CTG
[ENA]
¡û
>WENV181311275
OFJB01000533
[OFJB] sludge metagenome; sludge
18290
18217
-
Gln
CTG
[ENA]
¡û
>WENV181311412
OFJB01001836
[OFJB] sludge metagenome; sludge
6041
6114
+
Gln
CTG
[ENA]
¡û
>WENV181311968
OFJB01028413
[OFJB] sludge metagenome; sludge
76
3
-
Gln
CTG
[ENA]
¡û
>WENV181312165
OFJB01051279
[OFJB] sludge metagenome; sludge
877
804
-
Gln
CTG
[ENA]
¡û
>WENV181401335
OFTX01000012
[OFTX] sludge metagenome; sludge
13781
13854
+
Gln
CTG
[ENA]
¡û
>WENV181402078
OFTY01000091
[OFTY] sludge metagenome; sludge
42709
42636
-
Gln
CTG
[ENA]
¡û
>W141151393
AXBA01000031
Alphaproteobacteria
Azorhizobium doebereinerae UFLA1-100 [AXBA]
57530
57603
+
Gln
CTG
[ENA]
¡û
>C08000293
AP009384
Alphaproteobacteria
Azorhizobium caulinodans ORS 571 [AP009384]
740234
740307
+
Gln
CTG
[Ensembl]
¡û
>W141278472
JAFO01000001
Alphaproteobacteria
Xanthobacter sp. 126 [JAFO]
1185114
1185187
+
Gln
CTG
[ENA]
¡û
>WENV183672112
ORJL011136509
[ORJL] groundwater metagenome; groundwater
988
1061
+
Gln
CTG
[ENA]
¡û
>WENV183672113
ORJL011136509
[ORJL] groundwater metagenome; groundwater
4149
4222
+
Gln
CTG
[ENA]
¡û
>WENV183725838
PJQF01022956
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
354
427
+
Gln
CTG
[ENA]
¡û
>WENV170003212
AGTN01261582
[AGTN] bioreactor metagenome; poplar biomass
140
67
-
Gln
CTG
[ENA]
¡û
>WENV170011950
APMI01105980
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
501
428
-
Gln
CTG
[ENA]
¡û
>WENV170152062
CEOE01028403
[CEOE] marine metagenome genome assembly TARA_025_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1033
1106
+
Gln
CTG
[ENA]
¡û
>WENV170649156
JRHI01007605
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
2966
2893
-
Gln
CTG
[ENA]
¡û
>WENV170706129
LNAP01001259
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
19429
19356
-
Gln
CTG
[ENA]
¡û
>WENV170709137
LNFM01000136
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
237067
237140
+
Gln
CTG
[ENA]
¡û
>WENV170711108
LNFM01003565
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
17914
17841
-
Gln
CTG
[ENA]
¡û
>WENV170714240
LNFM01063087
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
675
602
-
Gln
CTG
[ENA]
¡û
>WENV170909884
MDTE01084230
[MDTE] marine metagenome; seawater
2400
2327
-
Gln
CTG
[ENA]
¡û
>C181089623
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
1483944
1484017
+
Gln
CTG
-
¡û
>C191000381
AP017626
Alphaproteobacteria
Pleomorphomonas sp. SM30 [AP017626]
357944
358017
+
Gln
CTG
-
¡û
>C191220336
LR536450
Alphaproteobacteria
Methylocella tundrae [LR536450]
3804519
3804592
+
Gln
CTG
-
¡û
>W141730057
JNIB01000001
Alphaproteobacteria
Xanthobacter sp. 91 [JNIB]
3043741
3043814
+
Gln
CTG
[ENA]
¡û
>W141739303
JNNO01000017
Alphaproteobacteria
Devosia sp. LC5 [JNNO]
6991
7064
+
Gln
CTG
[ENA]
¡û
>C09107931
CP001280
Alphaproteobacteria
Methylocella silvestris BL2 [CP001280]
289085
289012
-
Gln
CTG
[Ensembl]
¡û
>W1910914009
NHSJ01000075
Alphaproteobacteria
Rhodoblastus sphagnicola DSM 16996 [NHSJ]
10229
10156
-
Gln
CTG
[ENA]
¡û
>W1810068778
PDZR01000002
Alphaproteobacteria
Methylocella silvestris TVC [PDZR]
12084
12157
+
Gln
CTG
[ENA]
¡û
>C151099608
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
998195
998122
-
Gln
CTG
[Ensembl]
¡û
>C151099609
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
998067
997994
-
Gln
CTG
[Ensembl]
¡û
>W2010080238
BGJX01000019
Alphaproteobacteria
Methylosinus sp. Ce-a6 [BGJX]
32350
32277
-
Gln
CTG
[ENA]
¡û
>W2010080266
BGJY01000002
Alphaproteobacteria
Methylosinus sporium DSM 17706 [BGJY]
199645
199572
-
Gln
CTG
[ENA]
¡û
>W2010105480
BJZO01000053
Alphaproteobacteria
Pararhodospirillum oryzae NBRC 107573 [BJZO]
25213
25140
-
Gln
CTG
[ENA]
¡û
>W2010586402
JABAOM010000007
Alphaproteobacteria
Devosia sp. 1635 [JABAOM]
68873
68800
-
Gln
CTG
[ENA]
¡û
>W2010781400
LMUI01000047
Alphaproteobacteria
Methylocapsa sp. S129 [LMUI]
50129
50202
+
Gln
CTG
[ENA]
¡û
>W2010967030
NHSJ01000075
Alphaproteobacteria
Rhodoblastus sphagnicola DSM 16996 [NHSJ]
10229
10156
-
Gln
CTG
[ENA]
¡û
>W2011208997
PPPR01000089
Alphaproteobacteria
Prosthecomicrobium hirschii SM57 [PPPR]
42705
42632
-
Gln
CTG
[ENA]
¡û
>W2011513146
RZNJ01000007
Alphaproteobacteria
Arsenicitalea aurantiaca 42-50 [RZNJ]
71912
71985
+
Gln
CTG
[ENA]
¡û
>W2011603659
SJAT01000018
Alphaproteobacteria
Rhizobiales bacterium PAMC 29128 [SJAT]
92896
92969
+
Gln
CTG
[ENA]
¡û
>W2011604948
SJFN01000002
Alphaproteobacteria
Ancalomicrobiaceae bacterium SA-279 [SJFN]
38582
38509
-
Gln
CTG
[ENA]
¡û
>W2011627319
SMAI01000004
Alphaproteobacteria
Aquabacter spiritensis DSM 9035 [SMAI]
296391
296318
-
Gln
CTG
[ENA]
¡û
>W2011655013
SOBM01000010
Alphaproteobacteria
Azorhizobium sp. AG788 [SOBM]
101273
101200
-
Gln
CTG
[ENA]
¡û
>W2011659079
SOEJ01000011
Alphaproteobacteria
Methylosinus sp. sav-2 [SOEJ]
84979
84906
-
Gln
CTG
[ENA]
¡û
>W2011663124
SOPH01000002
Alphaproteobacteria
Methylocystis heyeri H2 [SOPH]
396897
396824
-
Gln
CTG
[ENA]
¡û
>W2011694449
STGC01000005
Alphaproteobacteria
Devosia sp. FKR38 [STGC]
700233
700306
+
Gln
CTG
[ENA]
¡û
>W2011785623
UCAU01000051
Alphaproteobacteria
Rhizobiales bacterium [UCAU]
48752
48679
-
Gln
CTG
[ENA]
¡û
>W2012398750
WNKS01000003
Alphaproteobacteria
Rhodoblastus acidophilus DSM 142 [WNKS]
391353
391426
+
Gln
CTG
[ENA]
¡û
>W2110517936
JAFNIH010000023
Alphaproteobacteria
Pinisolibacter sp. B13 [JAFNIH]
349802
349729
-
Gln
CTG
[ENA]
¡û
>W2110540678
JAGGML010000001
Alphaproteobacteria
Xanthobacter flavus WS4821 [JAGGML]
3294398
3294471
+
Gln
CTG
[ENA]
¡û
>W2110581079
JAGXTP010000001
Alphaproteobacteria
Devosia sp. BSSL-BM10 [JAGXTP]
2062937
2062864
-
Gln
CTG
[ENA]
¡û
>W2110590304
JAHBGC010000009
Alphaproteobacteria
Ancylobacter dichloromethanicus VKM B-2484 [JAHBGC]
91368
91441
+
Gln
CTG
[ENA]
¡û
>C211176125
CP063362
Alphaproteobacteria
Xanthobacter sp. YN2 [CP063362]
3395338
3395411
+
Gln
CTG
-
¡û
>C211324976
CP073764
Alphaproteobacteria
Methylovirgula sp. HY1 [CP073764]
1029906
1029833
-
Gln
CTG
-
¡û
>C231041364
CP032674
Alphaproteobacteria
Xanthobacter sp. YC-JY1 [CP032674]
882105
882178
+
Gln
CTG
-
¡û
>C231097004
CP063401
Alphaproteobacteria
Devosia sp. SL43 [CP063401]
4130586
4130659
+
Gln
CTG
-
¡û
>C231326023
CP092968
Alphaproteobacteria
Methylocystis parvus OBBP [CP092968]
1557329
1557256
-
Gln
CTG
-
¡û
>C231501192
CP104974
Alphaproteobacteria
Devosia sp. A8/3-2 [CP104974]
3273128
3273201
+
Gln
CTG
-
¡û
>C231516801
CP107558
Alphaproteobacteria
Methylocystis sp. MJC1 [CP107558]
2763840
2763913
+
Gln
CTG
-
¡û
>C241064570
CP042304
Alphaproteobacteria
Devosia ginsengisoli Gsoil 520 [CP042304]
611539
611466
-
Gln
CTG
-
¡û
>W10118833
ADVE01000025
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
8995
8922
-
Gln
CTG
[ENA]
¡û
>C241105196
CP046052
Alphaproteobacteria
Methylocystis heyeri H2 [CP046052]
3889843
3889916
+
Gln
CTG
-
¡û
>C241237359
CP119869
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP119869]
1647309
1647236
-
Gln
CTG
-
¡û
>W2310021149
BSDO01000005
Alphaproteobacteria
Xanthobacter flavus 301 [BSDO]
339455
339382
-
Gln
CTG
[ENA]
¡û
>W2310022804
BSFJ01000003
Alphaproteobacteria
Ancylobacter dichloromethanicus VKM B-2484 [BSFJ]
91368
91441
+
Gln
CTG
[ENA]
¡û
>W2310023950
BSNG01000001
Alphaproteobacteria
Devosia yakushimensis NBRC 103855 [BSNG]
2069931
2070004
+
Gln
CTG
[ENA]
¡û
>W2310026352
BSPM01000008
Alphaproteobacteria
Oharaeibacter diazotrophicus NBRC 111955 [BSPM]
582709
582782
+
Gln
CTG
[ENA]
¡û
>W11125005
ADVE01000025
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
8995
8922
-
Gln
CTG
[ENA]
¡û
>W1511568562
LAJE01000061
Alphaproteobacteria
Devosia insulae DS-56 [LAJE]
128909
128836
-
Gln
CTG
[ENA]
¡û
>W11150236
AEVM01000007
Alphaproteobacteria
Methylocystis sp. ATCC 49242 [AEVM]
26429
26356
-
Gln
CTG
[ENA]
¡û
>C161047978
CP012945
Alphaproteobacteria
Devosia sp. A16 [CP012945]
3901461
3901388
-
Gln
CTG
-
¡û
>W121067995
AJTV01000022
Alphaproteobacteria
Methylocystis parvus OBBP [AJTV]
56725
56652
-
Gln
CTG
[ENA]
¡û
>W1610722525
LMCR01000012
Alphaproteobacteria
Devosia sp. Root105 [LMCR]
824450
824523
+
Gln
CTG
[ENA]
¡û
>W1610724299
LMEA01000008
Alphaproteobacteria
Devosia sp. Root413D1 [LMEA]
442503
442430
-
Gln
CTG
[ENA]
¡û
>W1610724918
LMEM01000004
Alphaproteobacteria
Devosia sp. Root436 [LMEM]
25173
25246
+
Gln
CTG
[ENA]
¡û
>W1611012762
LXWX01000069
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
27668
27595
-
Gln
CTG
[ENA]
¡û
>W1710582176
FPKU01000001
Alphaproteobacteria
Devosia enhydra [FPKU]
190955
190882
-
Gln
CTG
[ENA]
¡û
>W1710583787
FQVC01000001
Alphaproteobacteria
Devosia limi DSM 17137 [FQVC]
87906
87979
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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