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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.453277 (13 seq.)
>WENV180718776
ODGH01000081
[ODGH] human metagenome; G_DNA_Posterior fornix
2252
2180
-
Trp
CCA
[ENA]
¡û
>WENV181025182
ODXA01000028
[ODXA] human metagenome; G_DNA_Posterior fornix
8360
8432
+
Trp
CCA
[ENA]
¡û
>WENV181052426
ODYF01000078
[ODYF] human metagenome; G_DNA_Posterior fornix
2252
2180
-
Trp
CCA
[ENA]
¡û
>C191044607
CP026503
Bacillota
Lactobacillus crispatus AB70 [CP026503]
1040673
1040745
+
Trp
CCA
-
¡û
>W1910980110
NKLH01000219
Bacillota
Lactobacillus crispatus RL14 [NKLH]
2724
2796
+
Trp
CCA
[ENA]
¡û
>W2010571237
JAAUWJ010000024
Bacillota
Lactobacillus crispatus UMB1163 [JAAUWJ]
16283
16355
+
Trp
CCA
[ENA]
¡û
>W2010993876
NKLH01000219
Bacillota
Lactobacillus crispatus RL14 [NKLH]
2724
2796
+
Trp
CCA
[ENA]
¡û
>W10102899
ACPV01000029
Bacillota
Lactobacillus crispatus 125-2-CHN [ACPV]
14219
14291
+
Trp
CCA
[ENA]
¡û
>C211401897
CP083393
Bacillota
Lactobacillus crispatus Lc116 [CP083393]
1006414
1006486
+
Trp
CCA
-
¡û
>C231090470
CP061005
Bacillota
Lactobacillus crispatus lc83 [CP061005]
1272150
1272078
-
Trp
CCA
-
¡û
>C231090518
CP061006
Bacillota
Lactobacillus crispatus lc31 [CP061006]
1029523
1029595
+
Trp
CCA
-
¡û
>C241120571
CP047415
Bacillota
Lactobacillus crispatus 1D [CP047415]
1077420
1077492
+
Trp
CCA
-
¡û
>W11103055
ACPV01000029
Bacillota
Lactobacillus crispatus 125-2-CHN [ACPV]
14219
14291
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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