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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.453387 (102 seq.)
>W1710909784
LNQV01000001
Betaproteobacteria
Aquitalea pelogenes [LNQV]
108935
108862
-
Cys
GCA
[ENA]
¡û
>W1710944141
LOQE01000034
Betaproteobacteria
Tepidimonas taiwanensis [LOQE]
27615
27688
+
Cys
GCA
[ENA]
¡û
>W131045632
AMRP01000026
Betaproteobacteria
Paracidovorax citrulli ZJU1106 [AMRP]
10250
10323
+
Cys
GCA
[ENA]
¡û
>W1711268799
LZDH01000056
Betaproteobacteria
Tepidimonas fonticaldi [LZDH]
451524
451597
+
Cys
GCA
[ENA]
¡û
>W131220734
ATZS01000143
Betaproteobacteria
beta proteobacterium SCGC AAA027-I06 [ATZS]
17523
17450
-
Cys
GCA
[ENA]
¡û
>W131226923
AUET01000006
Betaproteobacteria
Comamonadaceae bacterium URHA0028 [AUET]
620191
620264
+
Cys
GCA
[ENA]
¡û
>W1711387332
MEGN01000006
Betaproteobacteria
Thiobacillus sp. SCN 65-179 [MEGN]
127034
127107
+
Cys
GCA
[ENA]
¡û
>C000145
CP000512
Betaproteobacteria
Paracidovorax citrulli AAC00-1 [CP000512]
1604505
1604432
-
Cys
GCA
[Ensembl]
¡û
>WENV180015635
FQKF011082342
[FQKF] soil metagenome; Soil
130
57
-
Cys
GCA
[ENA]
¡û
>WENV180691688
OCZS010187384
[OCZS] soil metagenome; soil
222
295
+
Cys
GCA
[ENA]
¡û
>WENV181231603
OFEK01041181
[OFEK] activated sludge metagenome; Anaerobic digester
108
181
+
Cys
GCA
[ENA]
¡û
>WENV181361168
OFNH01002970
[OFNH] sediment metagenome; Lake sediment
141
214
+
Cys
GCA
[ENA]
¡û
>WENV181363106
OFOS01000012
[OFOS] sediment metagenome; Lake sediment
17306
17233
-
Cys
GCA
[ENA]
¡û
>WENV181364643
OFPA01000011
[OFPA] sediment metagenome; Lake sediment
53349
53422
+
Cys
GCA
[ENA]
¡û
>WENV181364729
OFPB01000086
[OFPB] sediment metagenome; Lake sediment
9072
8999
-
Cys
GCA
[ENA]
¡û
>WENV181365283
OFPN01000016
[OFPN] sediment metagenome; Lake sediment
53366
53439
+
Cys
GCA
[ENA]
¡û
>WENV181368211
OFQK01004691
[OFQK] freshwater metagenome; Freshwater Lake
141
68
-
Cys
GCA
[ENA]
¡û
>WENV181369146
OFQO01003250
[OFQO] freshwater metagenome; Freshwater Lake
204
277
+
Cys
GCA
[ENA]
¡û
>WENV181369366
OFQP01000788
[OFQP] freshwater metagenome; Freshwater Lake
3718
3791
+
Cys
GCA
[ENA]
¡û
>WENV181369853
OFQR01000754
[OFQR] freshwater metagenome; Freshwater Lake
3193
3120
-
Cys
GCA
[ENA]
¡û
>WENV181370270
OFQS01001661
[OFQS] freshwater metagenome; Freshwater Lake
4
77
+
Cys
GCA
[ENA]
¡û
>WENV181370276
OFQS01001794
[OFQS] freshwater metagenome; Freshwater Lake
4
77
+
Cys
GCA
[ENA]
¡û
>WENV181370391
OFQS01007851
[OFQS] freshwater metagenome; Freshwater Lake
948
1021
+
Cys
GCA
[ENA]
¡û
>WENV181377768
OFRA01030595
[OFRA] wastewater metagenome; Lake Maggiore Verbania
289
216
-
Cys
GCA
[ENA]
¡û
>WENV181384815
OFRI01012337
[OFRI] wastewater metagenome; Exp Tend VB 90WW
1001
1074
+
Cys
GCA
[ENA]
¡û
>WENV181387265
OFRL01071507
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
194
267
+
Cys
GCA
[ENA]
¡û
>WENV181400177
OFSF01002046
[OFSF] wastewater metagenome; Exp Tend VB 100WW
2275
2202
-
Cys
GCA
[ENA]
¡û
>WENV181401086
OFSF01053559
[OFSF] wastewater metagenome; Exp Tend VB 100WW
20
93
+
Cys
GCA
[ENA]
¡û
>WENV181402125
OFTY01000141
[OFTY] sludge metagenome; sludge
50964
50891
-
Cys
GCA
[ENA]
¡û
>WENV181416215
OGCL01061923
[OGCL] hot springs metagenome; Hot spring water
15
88
+
Cys
GCA
[ENA]
¡û
>WENV181836358
OGVJ01005302
[OGVJ] freshwater metagenome; freshwater
1178
1105
-
Cys
GCA
[ENA]
¡û
>WENV181843615
OGVU01034853
[OGVU] freshwater metagenome; freshwater
393
320
-
Cys
GCA
[ENA]
¡û
>WENV181844813
OGVW01034857
[OGVW] freshwater metagenome; freshwater
464
537
+
Cys
GCA
[ENA]
¡û
>W141277654
JAET01000002
Betaproteobacteria
Dechloromonas agitata is5 [JAET]
124264
124337
+
Cys
GCA
[ENA]
¡û
>WENV183725241
PJQE01210219
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
335
262
-
Cys
GCA
[ENA]
¡û
>WENV170010867
APMI01032089
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
4904
4831
-
Cys
GCA
[ENA]
¡û
>WENV170011636
APMI01078602
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
78
5
-
Cys
GCA
[ENA]
¡û
>WENV170018896
BBPD01001940
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
8038
8111
+
Cys
GCA
[ENA]
¡û
>WENV170606288
FUWD010641357
[FUWD] metagenome; unknown
100
27
-
Cys
GCA
[ENA]
¡û
>WENV170669207
LAHR01037739
[LAHR] activated sludge metagenome; Sample C-3; Sludge from acetogenic chamber (third chamber) of Anaerobic Baffled Reactor over
124
197
+
Cys
GCA
[ENA]
¡û
>WENV170709376
LNFM01000294
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
330
257
-
Cys
GCA
[ENA]
¡û
>WENV170712065
LNFM01009537
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
13657
13584
-
Cys
GCA
[ENA]
¡û
>C181088966
CP023687
Betaproteobacteria
Paracidovorax citrulli KACC17005 [CP023687]
2948564
2948637
+
Cys
GCA
-
¡û
>C181176222
CP029210
Betaproteobacteria
Aquabacterium olei NBRC 110486 [CP029210]
2253097
2253024
-
Cys
GCA
-
¡û
>C191005457
AP018823
Betaproteobacteria
Aquitalea magnusonii H3 [AP018823]
482880
482953
+
Cys
GCA
-
¡û
>C191063795
CP029373
Betaproteobacteria
Paracidovorax citrulli M6 [CP029373]
3496870
3496797
-
Cys
GCA
-
¡û
>C191171864
CP039731
Betaproteobacteria
Aquitalea aquatilis THG-DN7.12 [CP039731]
2200151
2200224
+
Cys
GCA
-
¡û
>W09106090
AASX01000015
Betaproteobacteria
Paracidovorax citrulli subsp. citrulli AAC00-1 [AASX]
79402
79475
+
Cys
GCA
[ENA]
¡û
>W1910888500
NERV01000003
Betaproteobacteria
Limnohabitans sp. T6-5 [NERV]
670962
671035
+
Cys
GCA
[ENA]
¡û
>W1910888502
NERV01000003
Betaproteobacteria
Limnohabitans sp. T6-5 [NERV]
671275
671348
+
Cys
GCA
[ENA]
¡û
>W1911398056
NWMV01000031
Betaproteobacteria
Macromonas sp. BK-30 [NWMV]
11593
11666
+
Cys
GCA
[ENA]
¡û
>W1911647746
QAJS01000006
Betaproteobacteria
Aquitalea sp. FJL05 [QAJS]
94174
94101
-
Cys
GCA
[ENA]
¡û
>W1911740734
QUSW01000004
Betaproteobacteria
Rhizobacter sp. S-16 [QUSW]
227620
227547
-
Cys
GCA
[ENA]
¡û
>W1810659536
QJKC01000012
Betaproteobacteria
Aquitalea magnusonii DSM 25134 [QJKC]
95004
94931
-
Cys
GCA
[ENA]
¡û
>W2010364830
CADEPL010000019
Betaproteobacteria
Vogesella oryzae [CADEPL]
43475
43402
-
Cys
GCA
[ENA]
¡û
>W2010953358
NERV01000003
Betaproteobacteria
Limnohabitans sp. T6-5 [NERV]
670962
671035
+
Cys
GCA
[ENA]
¡û
>W2010953360
NERV01000003
Betaproteobacteria
Limnohabitans sp. T6-5 [NERV]
671275
671348
+
Cys
GCA
[ENA]
¡û
>W2010953392
NERW01000002
Betaproteobacteria
Limnohabitans sp. T6-20 [NERW]
765933
766006
+
Cys
GCA
[ENA]
¡û
>W2010953718
NESE01000002
Betaproteobacteria
Limnohabitans sp. Hippo4 [NESE]
439255
439328
+
Cys
GCA
[ENA]
¡û
>W2011134864
NWMV01000031
Betaproteobacteria
Macromonas sp. BK-30 [NWMV]
11593
11666
+
Cys
GCA
[ENA]
¡û
>W2011235730
QAJS01000006
Betaproteobacteria
Aquitalea sp. FJL05 [QAJS]
94174
94101
-
Cys
GCA
[ENA]
¡û
>W2011306182
QUSW01000004
Betaproteobacteria
Rhizobacter sp. S-16 [QUSW]
227620
227547
-
Cys
GCA
[ENA]
¡û
>W2011389452
RBXP01000011
Betaproteobacteria
Azonexus fungiphilus DSM 23841 [RBXP]
121617
121690
+
Cys
GCA
[ENA]
¡û
>W2011453456
RKQL01000001
Betaproteobacteria
Tibeticola sediminis DSM 101684 [RKQL]
341442
341369
-
Cys
GCA
[ENA]
¡û
>W2011490140
RSED01000035
Betaproteobacteria
Aquabacterium sp. SJQ9 [RSED]
14231
14158
-
Cys
GCA
[ENA]
¡û
>W2011537801
SCMM01000051
Betaproteobacteria
Ramlibacter sp. 2FC [SCMM]
20292
20365
+
Cys
GCA
[ENA]
¡û
>W2011603087
SIXI01000002
Betaproteobacteria
Aquabacterium sp. KMB7 [SIXI]
327382
327309
-
Cys
GCA
[ENA]
¡û
>W2011650612
SNYL01000002
Betaproteobacteria
Tepidicella xavieri DSM 19605 [SNYL]
184037
183964
-
Cys
GCA
[ENA]
¡û
>W2012062111
VJNA01000010
Betaproteobacteria
Tepidimonas aquatica CLN-1 [VJNA]
25760
25833
+
Cys
GCA
[ENA]
¡û
>W2012062824
VJOM01000030
Betaproteobacteria
Tepidimonas taiwanensis I1-1 [VJOM]
27833
27906
+
Cys
GCA
[ENA]
¡û
>W2012107143
VORK01000006
Betaproteobacteria
Extensimonas vulgaris S4 [VORK]
149889
149962
+
Cys
GCA
[ENA]
¡û
>W2110425194
JAELTO010000057
Betaproteobacteria
Xylophilus sp. ASV27 [JAELTO]
22144
22217
+
Cys
GCA
[ENA]
¡û
>W2110426652
JAELUN010000083
Betaproteobacteria
Aquitalea sp. ASV1 [JAELUN]
12323
12396
+
Cys
GCA
[ENA]
¡û
>W2110496477
JAFGZA010000011
Betaproteobacteria
Niveibacterium umoris KACC 17062 [JAFGZA]
2363377
2363304
-
Cys
GCA
[ENA]
¡û
>C201197931
CP047241
Betaproteobacteria
Aquitalea denitrificans 5YN1-3 [CP047241]
3362296
3362223
-
Cys
GCA
-
¡û
>C211120597
CP059256
Betaproteobacteria
Burkholderiaceae bacterium [CP059256]
109227
109154
-
Cys
GCA
-
¡û
>C231140144
CP075191
Betaproteobacteria
Ferribacterium limneticum 128 [CP075191]
1961761
1961834
+
Cys
GCA
-
¡û
>C231220523
CP086023
Betaproteobacteria
Acidovorax citrulli HPP21-3-3B [CP086023]
3440841
3440914
+
Cys
GCA
-
¡û
>C231381452
CP097265
Betaproteobacteria
Acidovorax sp. GBBC 712 [CP097265]
1653660
1653587
-
Cys
GCA
-
¡û
>C231381501
CP097266
Betaproteobacteria
Acidovorax sp. NCPPB 3859 [CP097266]
1653660
1653587
-
Cys
GCA
-
¡û
>C231381543
CP097267
Betaproteobacteria
Acidovorax sp. NCPPB 3576 [CP097267]
3473403
3473330
-
Cys
GCA
-
¡û
>C241166949
CP054424
Betaproteobacteria
Rhodoferax sp. BAB1 [CP054424]
1999075
1999002
-
Cys
GCA
-
¡û
>C241276391
CP127360
Betaproteobacteria
Paracidovorax citrulli KACC 18784 [CP127360]
2936171
2936244
+
Cys
GCA
-
¡û
>C241276442
CP127361
Betaproteobacteria
Paracidovorax citrulli KACC 18782 [CP127361]
2888105
2888178
+
Cys
GCA
-
¡û
>C241276528
CP127362
Betaproteobacteria
Paracidovorax citrulli KACC 17913 [CP127362]
1586086
1586013
-
Cys
GCA
-
¡û
>C241276552
CP127363
Betaproteobacteria
Paracidovorax citrulli KACC 17005 [CP127363]
3766149
3766222
+
Cys
GCA
-
¡û
>C241276602
CP127364
Betaproteobacteria
Paracidovorax citrulli KACC 17001 [CP127364]
3589435
3589508
+
Cys
GCA
-
¡û
>W2310018163
BQXE01000001
Betaproteobacteria
Acidovorax sp. SUPP950 [BQXE]
959802
959729
-
Cys
GCA
[ENA]
¡û
>W1510720158
CXOO01000034
Betaproteobacteria
Limnohabitans sp. DM1 [CXOO]
32869
32942
+
Cys
GCA
[ENA]
¡û
>W1511348534
JRKM01000001
Betaproteobacteria
Aquabacterium sp. NJ1 [JRKM]
675437
675364
-
Cys
GCA
[ENA]
¡û
>W1511403255
JTKY01000069
Betaproteobacteria
Tepidimonas taiwanensis VT154-175 [JTKY]
10006
10079
+
Cys
GCA
[ENA]
¡û
>W1511429850
JUEA01000038
Betaproteobacteria
Comamonadaceae bacterium BICA1-1 [JUEA]
58397
58324
-
Cys
GCA
[ENA]
¡û
>W1511433191
JUHA01000006
Betaproteobacteria
Methylibium sp. YR605 [JUHA]
240953
240880
-
Cys
GCA
[ENA]
¡û
>W1511503074
JXDJ01000024
Betaproteobacteria
Paracidovorax citrulli tw6 [JXDJ]
262306
262379
+
Cys
GCA
[ENA]
¡û
>W1511547618
JZRC01000008
Betaproteobacteria
Aquitalea magnusonii SM6 [JZRC]
321724
321797
+
Cys
GCA
[ENA]
¡û
>W1511691394
LFYT01000003
Betaproteobacteria
Limnohabitans planktonicus II-D5 [LFYT]
381991
381918
-
Cys
GCA
[ENA]
¡û
>W1610671406
LKCX01000011
Betaproteobacteria
Curvibacter sp. PAE-UM [LKCX]
55236
55309
+
Cys
GCA
[ENA]
¡û
>W1610768093
LNQU01000022
Betaproteobacteria
Aquitalea magnusonii [LNQU]
17094
17021
-
Cys
GCA
[ENA]
¡û
>W1610768143
LNQV01000001
Betaproteobacteria
Aquitalea pelogenes [LNQV]
108935
108862
-
Cys
GCA
[ENA]
¡û
>W1610800441
LOQE01000034
Betaproteobacteria
Tepidimonas taiwanensis [LOQE]
27615
27688
+
Cys
GCA
[ENA]
¡û
>W1611029611
LZDH01000056
Betaproteobacteria
Tepidimonas fonticaldi [LZDH]
451524
451597
+
Cys
GCA
[ENA]
¡û
>W1710519711
FNEY01000005
Betaproteobacteria
Paracidovorax citrulli [FNEY]
187204
187277
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK