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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.453411 (69 seq.)
>WENV180000591
FLNV01000775
[FLNV] bioreactor metagenome; Moose rumen
15041
14970
-
Gln
TTG
[ENA]
¡û
>WENV180000727
FLNV01001449
[FLNV] bioreactor metagenome; Moose rumen
2675
2602
-
Gln
TTG
[ENA]
¡û
>WENV180000793
FLNV01002062
[FLNV] bioreactor metagenome; Moose rumen
31758
31687
-
Gln
TTG
[ENA]
¡û
>WENV180001195
FLNX01000262
[FLNX] bioreactor metagenome; Moose rumen
8249
8320
+
Gln
TTG
[ENA]
¡û
>WENV180002647
FLNY01003109
[FLNY] bioreactor metagenome; Moose rumen
34738
34665
-
Gln
TTG
[ENA]
¡û
>WENV180002865
FLNY01004083
[FLNY] bioreactor metagenome; Moose rumen
16361
16432
+
Gln
TTG
[ENA]
¡û
>WENV180003280
FLNZ01002531
[FLNZ] bioreactor metagenome; Moose rumen
44927
44856
-
Gln
TTG
[ENA]
¡û
>WENV180652299
OCVV010048472
[OCVV] gut metagenome; gut
839
767
-
Gln
TTG
[ENA]
¡û
>WENV180652300
OCVV010048472
[OCVV] gut metagenome; gut
839
767
-
Gln
TTG
[ENA]
¡û
>WENV180654067
OCVV010272213
[OCVV] gut metagenome; gut
1582
1653
+
Gln
TTG
[ENA]
¡û
>WENV180654068
OCVV010272213
[OCVV] gut metagenome; gut
1582
1653
+
Gln
TTG
[ENA]
¡û
>WENV180656271
OCVV010533544
[OCVV] gut metagenome; gut
757
828
+
Gln
TTG
[ENA]
¡û
>WENV180656272
OCVV010533544
[OCVV] gut metagenome; gut
757
828
+
Gln
TTG
[ENA]
¡û
>WENV180670523
OCVV011303099
[OCVV] gut metagenome; gut
3145
3216
+
Gln
TTG
[ENA]
¡û
>WENV180670524
OCVV011303099
[OCVV] gut metagenome; gut
3145
3216
+
Gln
TTG
[ENA]
¡û
>WENV180670889
OCVV011307405
[OCVV] gut metagenome; gut
7839
7910
+
Gln
TTG
[ENA]
¡û
>WENV180670890
OCVV011307405
[OCVV] gut metagenome; gut
7839
7910
+
Gln
TTG
[ENA]
¡û
>WENV180670947
OCVV011308463
[OCVV] gut metagenome; gut
3644
3715
+
Gln
TTG
[ENA]
¡û
>WENV180670948
OCVV011308463
[OCVV] gut metagenome; gut
3644
3715
+
Gln
TTG
[ENA]
¡û
>WENV180679843
OCVV012386609
[OCVV] gut metagenome; gut
194
120
-
Gln
TTG
[ENA]
¡û
>WENV180679844
OCVV012386609
[OCVV] gut metagenome; gut
194
120
-
Gln
TTG
[ENA]
¡û
>WENV180682401
OCVV012825476
[OCVV] gut metagenome; gut
261
332
+
Gln
TTG
[ENA]
¡û
>WENV180682402
OCVV012825476
[OCVV] gut metagenome; gut
261
332
+
Gln
TTG
[ENA]
¡û
>WENV180684747
OCVV012861816
[OCVV] gut metagenome; gut
10507
10578
+
Gln
TTG
[ENA]
¡û
>WENV180684748
OCVV012861816
[OCVV] gut metagenome; gut
10507
10578
+
Gln
TTG
[ENA]
¡û
>WENV180685493
OCVV012873367
[OCVV] gut metagenome; gut
2579
2508
-
Gln
TTG
[ENA]
¡û
>WENV180685494
OCVV012873367
[OCVV] gut metagenome; gut
2579
2508
-
Gln
TTG
[ENA]
¡û
>WENV181744363
OGQM01000441
[OGQM] human gut metagenome; faeces
9069
8998
-
Gln
TTG
[ENA]
¡û
>WENV170775581
LXOW01063225
[LXOW] bovine gut metagenome; Cow rumen
1726
1797
+
Gln
TTG
[ENA]
¡û
>WENV170775847
LXOW01096853
[LXOW] bovine gut metagenome; Cow rumen
99
26
-
Gln
TTG
[ENA]
¡û
>WENV170776131
LXOW01130192
[LXOW] bovine gut metagenome; Cow rumen
72
1
-
Gln
TTG
[ENA]
¡û
>WENV170776292
LXOW01149889
[LXOW] bovine gut metagenome; Cow rumen
1357
1428
+
Gln
TTG
[ENA]
¡û
>WENV170776772
LXOW01209366
[LXOW] bovine gut metagenome; Cow rumen
3970
3897
-
Gln
TTG
[ENA]
¡û
>WENV170776923
LXOW01225185
[LXOW] bovine gut metagenome; Cow rumen
271
198
-
Gln
TTG
[ENA]
¡û
>WENV170777559
LXOW01299242
[LXOW] bovine gut metagenome; Cow rumen
1045
1116
+
Gln
TTG
[ENA]
¡û
>WENV170778495
LXOW01409652
[LXOW] bovine gut metagenome; Cow rumen
11636
11707
+
Gln
TTG
[ENA]
¡û
>W141557110
JHUW01000009
Bacteroidota
Prevotella sp. MA2016 [JHUW]
134444
134517
+
Gln
TTG
[ENA]
¡û
>W141557469
JHVE01000006
Bacteroidota
Prevotella sp. P6B4 [JHVE]
141463
141390
-
Gln
TTG
[ENA]
¡û
>W141559879
JHXD01000001
Bacteroidota
Xylanibacter ruminicola Ga6B6 [JHXD]
309175
309102
-
Gln
TTG
[ENA]
¡û
>W141560067
JHXG01000016
Bacteroidota
Xylanibacter brevis P6B11 [JHXG]
17675
17604
-
Gln
TTG
[ENA]
¡û
>W141560308
JHXM01000003
Bacteroidota
Xylanibacter brevis ATCC 19188 [JHXM]
95146
95217
+
Gln
TTG
[ENA]
¡û
>W141732601
JNKF01000010
Bacteroidota
Prevotella sp. P6B1 [JNKF]
122320
122393
+
Gln
TTG
[ENA]
¡û
>W141732667
JNKG01000009
Bacteroidota
Prevotella sp. RM4 [JNKG]
278669
278596
-
Gln
TTG
[ENA]
¡û
>W141817419
JQKR01000012
Bacteroidota
Prevotella sp. FD3004 [JQKR]
49654
49725
+
Gln
TTG
[ENA]
¡û
>W2110073078
BPTT01000001
Bacteroidota
Prevotella ruminicola JCM 8259 [BPTT]
3427934
3428005
+
Gln
TTG
[ENA]
¡û
>C211297620
CP071890
Bacteroidota
Prevotella ruminicola KHP1 [CP071890]
2280176
2280105
-
Gln
TTG
-
¡û
>C231305961
CP091786
Bacteroidota
Prevotella sp. E9-3 [CP091786]
3675284
3675355
+
Gln
TTG
-
¡û
>C231306014
CP091787
Bacteroidota
Prevotella sp. E13-17 [CP091787]
3068491
3068562
+
Gln
TTG
-
¡û
>C231306067
CP091788
Bacteroidota
Prevotella sp. E2-28 [CP091788]
3377741
3377814
+
Gln
TTG
-
¡û
>C231306117
CP091790
Bacteroidota
Prevotella sp. E13-3 [CP091790]
3453925
3453998
+
Gln
TTG
-
¡û
>C231306167
CP091791
Bacteroidota
Prevotella sp. E2-25 [CP091791]
3263919
3263992
+
Gln
TTG
-
¡û
>C231306218
CP091792
Bacteroidota
Prevotella sp. E1-9 [CP091792]
3373990
3374063
+
Gln
TTG
-
¡û
>C231306270
CP091793
Bacteroidota
Prevotella sp. E1-a [CP091793]
3373958
3374031
+
Gln
TTG
-
¡û
>C231306344
CP091794
Bacteroidota
Prevotella sp. E15-14 [CP091794]
228611
228538
-
Gln
TTG
-
¡û
>C231368327
CP096247
Bacteroidota
Prevotella sp. E15-22 [CP096247]
149146
149219
+
Gln
TTG
-
¡û
>C10110404
CP002006
Bacteroidota
Xylanibacter ruminicola 23 Bryant 23 [CP002006]
2772360
2772433
+
Gln
TTG
[Ensembl]
¡û
>W1710516534
FNCQ01000001
Bacteroidota
Prevotella communis BP1-148 [FNCQ]
122702
122629
-
Gln
TTG
[ENA]
¡û
>W1710524625
FNIW01000008
Bacteroidota
Prevotella communis BP1-145 [FNIW]
124063
123990
-
Gln
TTG
[ENA]
¡û
>W1710526039
FNJZ01000002
Bacteroidota
Prevotella sp. khp1 [FNJZ]
647845
647772
-
Gln
TTG
[ENA]
¡û
>W1710533540
FNRF01000001
Bacteroidota
Xylanibacter ruminicola [FNRF]
945733
945660
-
Gln
TTG
[ENA]
¡û
>W1710538043
FNUF01000005
Bacteroidota
Prevotella sp. lc2012 [FNUF]
79555
79484
-
Gln
TTG
[ENA]
¡û
>W1710538790
FNUV01000002
Bacteroidota
Xylanibacter ruminicola [FNUV]
34899
34970
+
Gln
TTG
[ENA]
¡û
>W1710540765
FNXC01000003
Bacteroidota
Xylanibacter ruminicola [FNXC]
833728
833655
-
Gln
TTG
[ENA]
¡û
>W1710546767
FOCK01000004
Bacteroidota
Prevotella sp. ne3005 [FOCK]
16311
16382
+
Gln
TTG
[ENA]
¡û
>W1710554734
FOIQ01000002
Bacteroidota
Prevotella aff. ruminicola Tc2-24 [FOIQ]
37184
37255
+
Gln
TTG
[ENA]
¡û
>W1710554911
FOIV01000002
Bacteroidota
Prevotella sp. khp7 [FOIV]
133953
134024
+
Gln
TTG
[ENA]
¡û
>W1710557667
FOLF01000001
Bacteroidota
Xylanibacter ruminicola [FOLF]
743256
743183
-
Gln
TTG
[ENA]
¡û
>W1710590606
FRBD01000006
Bacteroidota
Xylanibacter ruminicola [FRBD]
95031
95104
+
Gln
TTG
[ENA]
¡û
>W1710592329
FRCJ01000003
Bacteroidota
Xylanibacter ruminicola [FRCJ]
400522
400449
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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