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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45342 (70 seq.)
>W1711174299
LWED01000015
Gammaproteobacteria
Shewanella baltica [LWED]
2091
2004
-
Ser
GGA
[ENA]
¡û
>W1711340603
MCBT01000048
Gammaproteobacteria
Shewanella colwelliana [MCBT]
524567
524654
+
Ser
GGA
[ENA]
¡û
>W1711621578
MPDG02000001
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
1026241
1026328
+
Ser
GGA
[ENA]
¡û
>W1711934423
NAJR01000005
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
263612
263699
+
Ser
GGA
[ENA]
¡û
>W1712080475
NGZL01000076
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
7073
7160
+
Ser
GGA
[ENA]
¡û
>WENV013232
AACY020363530
Marine microbial communities from Global Ocean Sampling (GOS)
1757
1846
+
Ser
GGA
[ENA]
>WENV013595
AACY020374141
Marine microbial communities from Global Ocean Sampling (GOS)
50977
50888
-
Ser
GGA
[ENA]
>C020628
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
2239902
2239989
+
Ser
GGA
[Ensembl]
¡û
>C022251
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
2118528
2118615
+
Ser
GGA
[Ensembl]
¡û
>C022353
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1999543
1999630
+
Ser
GGA
[Ensembl]
¡û
>C022449
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
2080710
2080797
+
Ser
GGA
[Ensembl]
¡û
>C022938
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
2235124
2235211
+
Ser
GGA
[Ensembl]
¡û
>C023250
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
2064592
2064679
+
Ser
GGA
[Ensembl]
¡û
>w026302
ABAU01000033
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
38252
38163
-
Ser
GGA
[ENA]
¡û
>w024929
AAZC01000079
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
716
627
-
Ser
GGA
[ENA]
¡û
>w018655
AATK01000071
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
5623
5534
-
Ser
GGA
[ENA]
¡û
>W141171242
AXZL01000072
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
106456
106543
+
Ser
GGA
[ENA]
¡û
>C08008621
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
2332682
2332769
+
Ser
GGA
[Ensembl]
¡û
>W141227915
BALN01000022
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 [BALN]
35984
36071
+
Ser
GGA
[ENA]
¡û
>W141236564
BBIN01000006
Gammaproteobacteria
Pseudoalteromonas sp. '520P1 No. 412' [BBIN]
48955
48868
-
Ser
GGA
[ENA]
¡û
>C08008727
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
2343061
2343148
+
Ser
GGA
[Ensembl]
¡û
>W141276810
JAEC01000004
Gammaproteobacteria
Shewanella colwelliana ATCC 39565 [JAEC]
5733
5646
-
Ser
GGA
[ENA]
¡û
>W141277714
JAEU01000007
Gammaproteobacteria
Shewanella putrefaciens HRCR-6 [JAEU]
204670
204583
-
Ser
GGA
[ENA]
¡û
>WENV020969
AACY020561247
Marine microbial communities from Global Ocean Sampling (GOS)
15035
14946
-
Ser
GGA
[ENA]
>C181016817
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
2811242
2811329
+
Ser
GGA
-
¡û
>C181057599
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
1327790
1327703
-
Ser
GGA
-
¡û
>C181063020
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
2701500
2701413
-
Ser
GGA
-
¡û
>C181075040
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
4130692
4130779
+
Ser
GGA
-
¡û
>C181164528
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
4583179
4583092
-
Ser
GGA
-
¡û
>C181165470
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
617932
617845
-
Ser
GGA
-
¡û
>C181167887
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
2165895
2165982
+
Ser
GGA
-
¡û
>W141520062
JGVI01000053
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
33104
33191
+
Ser
GGA
[ENA]
¡û
>W09102906
AAIO01000091
Gammaproteobacteria
Shewanella baltica OS155 [AAIO]
12090
12177
+
Ser
GGA
[ENA]
¡û
>W09103926
AALB01000027
Gammaproteobacteria
Shewanella putrefaciens CN-32 [AALB]
41481
41394
-
Ser
GGA
[ENA]
¡û
>W09104022
AALH01000005
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
145116
145029
-
Ser
GGA
[ENA]
¡û
>W09104593
AALX01000016
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
72116
72029
-
Ser
GGA
[ENA]
¡û
>C191205251
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
4319998
4320085
+
Ser
GGA
-
¡û
>C191206491
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
2785138
2785051
-
Ser
GGA
-
¡û
>C191219832
LR217720
Gammaproteobacteria
Candidatus Erwinia haradaeae ErCilaricifoliae [LR217720]
344717
344804
+
Ser
GGA
-
¡û
>C09109214
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
2825952
2825865
-
Ser
GGA
[Ensembl]
¡û
>W1910913746
NHRI01000003
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
81524
81611
+
Ser
GGA
[ENA]
¡û
>W1911179121
NQMR01000212
Gammaproteobacteria
Pseudoalteromonas sp. NBT06-2 [NQMR]
1723
1810
+
Ser
GGA
[ENA]
¡û
>W1911551677
OXJV01000016
Gammaproteobacteria
Shewanella algidipiscicola [OXJV]
177370
177283
-
Ser
GGA
[ENA]
¡û
>W1911710047
QPQT01000006
Gammaproteobacteria
Shewanella algidipiscicola LMG 23746 [QPQT]
108580
108493
-
Ser
GGA
[ENA]
¡û
>W1810073404
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
3972492
3972405
-
Ser
GGA
[ENA]
¡û
>W1810422976
PYSG01000002
Gammaproteobacteria
Shewanella morhuae CW7 [PYSG]
1295110
1295197
+
Ser
GGA
[ENA]
¡û
>W1810587736
QFLG01000016
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
93310
93397
+
Ser
GGA
[ENA]
¡û
>W1810721552
QNSC01000004
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
117008
117095
+
Ser
GGA
[ENA]
¡û
>W1510021571
BBZB01000001
Gammaproteobacteria
Pseudoalteromonas sp. '520P1 No. 423' [BBZB]
3208670
3208583
-
Ser
GGA
[ENA]
¡û
>W10119043
ADVH01000002
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
253784
253871
+
Ser
GGA
[ENA]
¡û
>W10126076
AECY01000008
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
2263
2176
-
Ser
GGA
[ENA]
¡û
>W10126412
AEDE01000005
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
194018
194105
+
Ser
GGA
[ENA]
¡û
>C11119441
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
2874571
2874484
-
Ser
GGA
[Ensembl]
¡û
>C11119482
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
2342883
2342970
+
Ser
GGA
[Ensembl]
¡û
>C11119581
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
2343649
2343736
+
Ser
GGA
[Ensembl]
¡û
>W1511403543
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
3769301
3769388
+
Ser
GGA
[ENA]
¡û
>W11125215
ADVH01000002
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
253784
253871
+
Ser
GGA
[ENA]
¡û
>W11133337
AECY01000008
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
2263
2176
-
Ser
GGA
[ENA]
¡û
>W11133673
AEDE01000005
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
194018
194105
+
Ser
GGA
[ENA]
¡û
>W11169893
AFOZ01000022
Gammaproteobacteria
Shewanella sp. HN-41 [AFOZ]
105226
105139
-
Ser
GGA
[ENA]
¡û
>W11178466
AGEX01000007
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
195835
195922
+
Ser
GGA
[ENA]
¡û
>W121103299
AKZL01000003
Gammaproteobacteria
Shewanella sp. POL2 [AKZL]
6260
6173
-
Ser
GGA
[ENA]
¡û
>W1610072113
BCUO01000025
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
8003
7916
-
Ser
GGA
[ENA]
¡û
>W1610617832
LGYY01000060
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
56369
56456
+
Ser
GGA
[ENA]
¡û
>W1610982612
LWED01000015
Gammaproteobacteria
Shewanella baltica [LWED]
2091
2004
-
Ser
GGA
[ENA]
¡û
>W1710069315
BCUO01000025
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
8003
7916
-
Ser
GGA
[ENA]
¡û
>W1710597940
FTNN01000010
Gammaproteobacteria
Shewanella morhuae [FTNN]
37804
37717
-
Ser
GGA
[ENA]
¡û
>W1710692454
JZWJ01000071
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
34328
34415
+
Ser
GGA
[ENA]
¡û
>W1710706666
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
4541680
4541593
-
Ser
GGA
[ENA]
¡û
>W1710744007
LGYY01000060
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
56369
56456
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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