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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.453947 (55 seq.)
>W1710862564
LMEM01000001
Alphaproteobacteria
Devosia sp. Root436 [LMEM]
564386
564313
-
Cys
GCA
[ENA]
¡û
>W131184834
ARTG01000004
Alphaproteobacteria
Hyphomicrobium zavarzinii ATCC 27496 [ARTG]
52964
52891
-
Cys
GCA
[ENA]
¡û
>W1711501158
MKRH01000005
Alphaproteobacteria
Alphaproteobacteria bacterium 64-11 [MKRH]
7425
7498
+
Cys
GCA
[ENA]
¡û
>WENV180020262
FTCZ01000835
[FTCZ] metagenome; soil
185860
185933
+
Cys
GCA
[ENA]
¡û
>WENV180022625
FTGL01001191
[FTGL] metagenome; soil
719
792
+
Cys
GCA
[ENA]
¡û
>WENV180029403
FTJK01000610
[FTJK] metagenome; soil
1377
1304
-
Cys
GCA
[ENA]
¡û
>WENV180105705
OAPD01159382
[OAPD] marine metagenome; 2010
199
272
+
Cys
GCA
[ENA]
¡û
>WENV180271481
OBEQ012280247
[OBEQ] groundwater metagenome; groundwater
848
921
+
Cys
GCA
[ENA]
¡û
>WENV180271916
OBEQ012329003
[OBEQ] groundwater metagenome; groundwater
1060
1133
+
Cys
GCA
[ENA]
¡û
>WENV180272195
OBEQ012354928
[OBEQ] groundwater metagenome; groundwater
345
418
+
Cys
GCA
[ENA]
¡û
>WENV180310054
OBJS01172883
[OBJS] beach sand metagenome; beach sand
171
98
-
Cys
GCA
[ENA]
¡û
>WENV180355969
OBNJ01012070
[OBNJ] sediment metagenome; sediment
286
213
-
Cys
GCA
[ENA]
¡û
>WENV181292899
OFHF01039524
[OFHF] soil metagenome; Clay
127
200
+
Cys
GCA
[ENA]
¡û
>WENV181294825
OFHH01050055
[OFHH] soil metagenome; Clay
502
429
-
Cys
GCA
[ENA]
¡û
>W141236644
BBIO01000002
Alphaproteobacteria
Tepidicaulis marinus MA2 [BBIO]
106397
106470
+
Cys
GCA
[ENA]
¡û
>W141260978
CCAO010000084
Alphaproteobacteria
Devosia sp. DBB001 DDB001 [CCAO]
43770
43697
-
Cys
GCA
[ENA]
¡û
>WENV183092524
OLLF01000238
[OLLF] soil metagenome; soil
3245
3318
+
Cys
GCA
[ENA]
¡û
>WENV183093010
OLLQ01000711
[OLLQ] soil metagenome; soil
1287
1214
-
Cys
GCA
[ENA]
¡û
>WENV183724892
PJQE01091823
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
93
166
+
Cys
GCA
[ENA]
¡û
>WENV170120204
CENJ01222050
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
256
183
-
Cys
GCA
[ENA]
¡û
>WENV170130749
CENR01027685
[CENR] marine metagenome genome assembly TARA_018_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
320
247
-
Cys
GCA
[ENA]
¡û
>WENV170553022
CXWK01005847
[CXWK] wastewater metagenome; activated sludge
170902
170975
+
Cys
GCA
[ENA]
¡û
>WENV170704994
LLEO01000385
[LLEO] bioreactor metagenome; day35 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
839
766
-
Cys
GCA
[ENA]
¡û
>WENV170710113
LNFM01001164
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
56397
56470
+
Cys
GCA
[ENA]
¡û
>WENV170710243
LNFM01001368
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
51536
51463
-
Cys
GCA
[ENA]
¡û
>WENV170710481
LNFM01001861
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
110246
110319
+
Cys
GCA
[ENA]
¡û
>WENV170711600
LNFM01005974
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5739
5812
+
Cys
GCA
[ENA]
¡û
>WENV170713012
LNFM01022338
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3084
3011
-
Cys
GCA
[ENA]
¡û
>WENV170961977
MRWF01000700
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
291323
291250
-
Cys
GCA
[ENA]
¡û
>WENV170963542
MRWG01000273
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
254030
253957
-
Cys
GCA
[ENA]
¡û
>W141485426
JFZJ01000033
Alphaproteobacteria
Rhodomicrobium udaipurense JA643 [JFZJ]
16352
16425
+
Cys
GCA
[ENA]
¡û
>W09135203
ACVL01000005
Alphaproteobacteria
Hyphomicrobium denitrificans ATCC 51888 [ACVL]
106071
105998
-
Cys
GCA
[ENA]
¡û
>W141739289
JNNO01000008
Alphaproteobacteria
Devosia sp. LC5 [JNNO]
79172
79099
-
Cys
GCA
[ENA]
¡û
>W141814314
JQGB01000024
Alphaproteobacteria
Devosia sp. 17-2-E-8 [JQGB]
10240
10313
+
Cys
GCA
[ENA]
¡û
>W2011255641
QHJE01000001
Alphaproteobacteria
Hyphomicrobium methylovorum Bras1 [QHJE]
3107806
3107733
-
Cys
GCA
[ENA]
¡û
>W2011412903
REFL01000001
Alphaproteobacteria
Tepidicaulis sp. EA10 [REFL]
990118
990191
+
Cys
GCA
[ENA]
¡û
>W2011785598
UCAU01000008
Alphaproteobacteria
Rhizobiales bacterium [UCAU]
50177
50250
+
Cys
GCA
[ENA]
¡û
>W2110429675
JAEMUJ010000131
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [JAEMUJ]
17175
17102
-
Cys
GCA
[ENA]
¡û
>W2110429744
JAEMUK010000029
Alphaproteobacteria
Rhodomicrobium udaipurense JA643 [JAEMUK]
16370
16443
+
Cys
GCA
[ENA]
¡û
>C201169817
CP045919
Alphaproteobacteria
Devosia sp. D6-9 [CP045919]
2244296
2244223
-
Cys
GCA
-
¡û
>C211255074
CP068983
Alphaproteobacteria
Paradevosia shaoguanensis J5-3 [CP068983]
4198218
4198291
+
Cys
GCA
-
¡û
>C231501063
CP104965
Alphaproteobacteria
Devosia neptuniae A18/4-1 [CP104965]
3712989
3713062
+
Cys
GCA
-
¡û
>C231501187
CP104974
Alphaproteobacteria
Devosia sp. A8/3-2 [CP104974]
3006290
3006363
+
Cys
GCA
-
¡û
>C241269876
CP126539
Alphaproteobacteria
Devosia sp. RR2S18 [CP126539]
2506060
2505987
-
Cys
GCA
-
¡û
>C241300645
CP132334
Alphaproteobacteria
Parvularcula sp. IMCC14364 [CP132334]
312496
312423
-
Cys
GCA
-
¡û
>C241329650
CP136758
Alphaproteobacteria
Parvularcula sp. LCG005 [CP136758]
2003149
2003222
+
Cys
GCA
-
¡û
>W2310023944
BSNG01000001
Alphaproteobacteria
Devosia yakushimensis NBRC 103855 [BSNG]
1808902
1808975
+
Cys
GCA
[ENA]
¡û
>C10107558
CP002083
Alphaproteobacteria
Hyphomicrobium denitrificans ATCC 51888 [CP002083]
1267681
1267608
-
Cys
GCA
[Ensembl]
¡û
>W1511568556
LAJE01000061
Alphaproteobacteria
Devosia insulae DS-56 [LAJE]
354980
354907
-
Cys
GCA
[ENA]
¡û
>W1511568616
LAJF01000089
Alphaproteobacteria
Devosia limi DSM 17137 [LAJF]
166365
166438
+
Cys
GCA
[ENA]
¡û
>W1511573943
LANJ01000011
Alphaproteobacteria
Devosia epidermidihirudinis E84 [LANJ]
392631
392704
+
Cys
GCA
[ENA]
¡û
>C131015833
CP005587
Alphaproteobacteria
Hyphomicrobium denitrificans 1NES1 [CP005587]
1313890
1313817
-
Cys
GCA
[Ensembl]
¡û
>W1610724910
LMEM01000001
Alphaproteobacteria
Devosia sp. Root436 [LMEM]
564386
564313
-
Cys
GCA
[ENA]
¡û
>W1710579345
FPCH01000002
Alphaproteobacteria
Hyphomicrobium facile [FPCH]
428094
428167
+
Cys
GCA
[ENA]
¡û
>W1710583799
FQVC01000002
Alphaproteobacteria
Devosia limi DSM 17137 [FQVC]
272018
271945
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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