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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.453966 (135 seq.)
>W1710878907
LMRI01000002
Actinomycetota
Rhodococcus sp. Leaf7 [LMRI]
606133
606060
-
Met
CAT
[ENA]
¡û
>W1710879231
LMRN01000009
Actinomycetota
Rhodococcus sp. Leaf225 [LMRN]
665533
665606
+
Met
CAT
[ENA]
¡û
>W1710879341
LMRP01000002
Actinomycetota
Rhodococcus sp. Leaf247 [LMRP]
606033
605960
-
Met
CAT
[ENA]
¡û
>W1710879363
LMRQ01000001
Actinomycetota
Rhodococcus sp. Leaf258 [LMRQ]
665694
665767
+
Met
CAT
[ENA]
¡û
>W1710935821
LOKT01000006
Actinomycetota
Nocardia donostiensis [LOKT]
229615
229690
+
Met
CAT
[ENA]
¡û
>W1710994837
LPZL01000016
Actinomycetota
Rhodococcus corynebacterioides [LPZL]
118795
118868
+
Met
CAT
[ENA]
¡û
>W1710994979
LPZO01000008
Actinomycetota
Rhodococcus kroppenstedtii [LPZO]
17576
17503
-
Met
CAT
[ENA]
¡û
>W1711050388
LRRM01000004
Actinomycetota
Nocardia brasiliensis [LRRM]
22577
22502
-
Met
CAT
[ENA]
¡û
>W1711613648
MOYO01000001
Actinomycetota
Nocardia seriolae [MOYO]
7162593
7162520
-
Met
CAT
[ENA]
¡û
>W1711747315
MUKP01000013
Actinomycetota
Nocardia donostiensis [MUKP]
83277
83202
-
Met
CAT
[ENA]
¡û
>W1711750426
MUMY01000017
Actinomycetota
Nocardia donostiensis [MUMY]
83977
83902
-
Met
CAT
[ENA]
¡û
>W1711767560
MVAC01000024
Actinomycetota
Nocardia seriolae [MVAC]
41990
42063
+
Met
CAT
[ENA]
¡û
>W131087861
AODO01000028
Actinomycetota
Rhodococcus triatomae BKS 15-14 [AODO]
101057
101132
+
Met
CAT
[ENA]
¡û
>C171068268
CP017839
Actinomycetota
Nocardia seriolae EM150506 [CP017839]
59877
59804
-
Met
CAT
-
¡û
>C171072546
CP018082
Actinomycetota
Nocardia mangyaensis Y48 [CP018082]
6600718
6600643
-
Met
CAT
-
¡û
>WENV180031983
FTJU01002312
[FTJU] metagenome; soil
19851
19776
-
Met
CAT
[ENA]
¢þ
>W141168704
AXVD01000010
Actinomycetota
Nocardia sp. CNY236 [AXVD]
131765
131690
-
Met
CAT
[ENA]
¡û
>W141231428
BAUA01000110
Actinomycetota
Nocardia brasiliensis IFM 10847 [BAUA]
20904
20829
-
Met
CAT
[ENA]
¡û
>W141233814
BAWD01000024
Actinomycetota
Nocardia seriolae N-2927 [BAWD]
34323
34250
-
Met
CAT
[ENA]
¡û
>C181003425
AP017900
Actinomycetota
Nocardia seriolae UTF1 [AP017900]
715332
715405
+
Met
CAT
-
¡û
>C181057478
CP022088
Actinomycetota
Nocardia brasiliensis FDAARGOS_352 [CP022088]
7331588
7331663
+
Met
CAT
-
¡û
>C181139076
CP026746
Actinomycetota
Nocardia cyriacigeorgica MDA3349 [CP026746]
2405076
2405151
+
Met
CAT
-
¡û
>C191065493
CP029710
Actinomycetota
Nocardia sp. CS682 [CP029710]
3847032
3846957
-
Met
CAT
-
¡û
>C191208397
LR134352
Actinomycetota
Nocardia asteroides NCTC11293 [LR134352]
29419
29344
-
Met
CAT
-
¡û
>C191219102
LR215973
Actinomycetota
Nocardia cyriacigeorgica 3012STDY6756504 [LR215973]
4080646
4080571
-
Met
CAT
-
¡û
>W141702675
JMLQ01000002
Actinomycetota
Rhodococcus sp. UNC23MFCrub1.1 [JMLQ]
62538
62611
+
Met
CAT
[ENA]
¡û
>W141759295
JNZF01000011
Actinomycetota
Nocardia carnea carneus [JNZF]
97898
97823
-
Met
CAT
[ENA]
¡û
>W141769073
JOFP01000002
Actinomycetota
Pilimelia anulata [JOFP]
918282
918207
-
Met
CAT
[ENA]
¡û
>W1910897068
NGAF01000008
Actinomycetota
Nocardia cerradoensis CNM20130759 [NGAF]
170328
170401
+
Met
CAT
[ENA]
¡û
>W1911493011
OBEG01000002
Actinomycetota
Nocardia amikacinitolerans DSM 45537 [OBEG]
1030192
1030117
-
Met
CAT
[ENA]
¡û
>W1911532692
OIFR01000018
Actinomycetota
Nocardia suismassiliense S-137 [OIFR]
608426
608351
-
Met
CAT
[ENA]
¡û
>W1911814641
QZFU01000016
Actinomycetota
Nocardia panacis YIM PH 21724 [QZFU]
280983
280908
-
Met
CAT
[ENA]
¡û
>W1810282657
PSZF01000009
Actinomycetota
Nocardia cyriacigeorgica MDA3732 [PSZF]
66639
66714
+
Met
CAT
[ENA]
¡û
>W1810390980
PXZE01000038
Actinomycetota
Nocardia seriolae HSY-NS01 [PXZE]
29949
30022
+
Met
CAT
[ENA]
¡û
>W1810402973
PYHT01000017
Actinomycetota
Nocardia sp. MDA0666 [PYHT]
136507
136580
+
Met
CAT
[ENA]
¡û
>W1810532535
QCYJ01000130
Actinomycetota
Nocardia aurea SYSU K10002 [QCYJ]
296214
296139
-
Met
CAT
[ENA]
¡û
>W1810608613
QGTL01000007
Actinomycetota
Nocardia neocaledoniensis DSM 44717 [QGTL]
294533
294608
+
Met
CAT
[ENA]
¡û
>W1810659628
QJKF01000004
Actinomycetota
Nocardia tenerifensis DSM 44704 [QJKF]
9232
9157
-
Met
CAT
[ENA]
¡û
>W1810720289
QNRE01000005
Actinomycetota
Nocardia puris DSM 44599 [QNRE]
190039
190114
+
Met
CAT
[ENA]
¡û
>C151013350
CP006850
Actinomycetota
Nocardia nova SH22a [CP006850]
7591343
7591268
-
Met
CAT
[Ensembl]
¡û
>W1510021298
BBYQ01000070
Actinomycetota
Nocardia seriolae U-1 [BBYQ]
8334
8407
+
Met
CAT
[ENA]
¡û
>W1511220645
JNCT01000058
Actinomycetota
Nocardia seriolae ZJ0503 [JNCT]
8385
8458
+
Met
CAT
[ENA]
¡û
>W1511221575
JNFP01000029
Actinomycetota
Nocardia vulneris W9851 [JNFP]
65078
65003
-
Met
CAT
[ENA]
¡û
>W1511509024
JXQS01000015
Actinomycetota
Rhodococcus sp. MEB064 [JXQS]
112644
112571
-
Met
CAT
[ENA]
¡û
>C121016061
FO082843
Actinomycetota
Nocardia cyriacigeorgica GUH-2 [FO082843]
5495433
5495358
-
Met
CAT
[Ensembl]
¡û
>C161084570
CP015219
Actinomycetota
Rhodococcus sp. PBTS 1 [CP015219]
307593
307666
+
Met
CAT
[Ensembl]
¡û
>W1610078325
BDAU01000048
Actinomycetota
Nocardia amikacinitolerans NBRC 108937 [BDAU]
28124
28199
+
Met
CAT
[ENA]
¡û
>W1610078501
BDAY01000009
Actinomycetota
Nocardia altamirensis NBRC 108246 [BDAY]
66598
66523
-
Met
CAT
[ENA]
¡û
>W1610078557
BDAZ01000012
Actinomycetota
Nocardia anaemiae NBRC 100462 [BDAZ]
104672
104747
+
Met
CAT
[ENA]
¡û
>W1610078613
BDBA01000050
Actinomycetota
Nocardia amamiensis NBRC 102102 [BDBA]
47783
47858
+
Met
CAT
[ENA]
¡û
>W1610078676
BDBB01000024
Actinomycetota
Nocardia arthritidis NBRC 100137 [BDBB]
19138
19063
-
Met
CAT
[ENA]
¡û
>W1610078743
BDBC01000070
Actinomycetota
Nocardia beijingensis NBRC 16342 [BDBC]
40991
41066
+
Met
CAT
[ENA]
¡û
>W1610078779
BDBD01000019
Actinomycetota
Nocardia coubleae NBRC 108252 [BDBD]
306327
306252
-
Met
CAT
[ENA]
¡û
>W1610078811
BDBE01000020
Actinomycetota
Nocardia caishijiensis NBRC 108228 [BDBE]
11489
11564
+
Met
CAT
[ENA]
¡û
>W1610078972
BDBH01000006
Actinomycetota
Nocardia harenae NBRC 108248 [BDBH]
7927
7852
-
Met
CAT
[ENA]
¡û
>W1610078997
BDBI01000002
Actinomycetota
Nocardia ignorata NBRC 108230 [BDBI]
259636
259711
+
Met
CAT
[ENA]
¡û
>W1610079118
BDBK01000002
Actinomycetota
Nocardia inohanensis NBRC 100128 [BDBK]
185533
185606
+
Met
CAT
[ENA]
¡û
>W1610079203
BDBL01000038
Actinomycetota
Nocardia kruczakiae NBRC 101016 [BDBL]
18641
18566
-
Met
CAT
[ENA]
¡û
>W1610079222
BDBM01000004
Actinomycetota
Nocardia gamkensis NBRC 108242 [BDBM]
320341
320416
+
Met
CAT
[ENA]
¡û
>W1610079381
BDBP01000031
Actinomycetota
Nocardia lijiangensis NBRC 108240 [BDBP]
84258
84183
-
Met
CAT
[ENA]
¡û
>W1610079449
BDBQ01000065
Actinomycetota
Nocardia miyunensis NBRC 108239 [BDBQ]
21510
21435
-
Met
CAT
[ENA]
¡û
>W1610079749
BDBW01000022
Actinomycetota
Nocardia puris NBRC 108233 [BDBW]
189943
190018
+
Met
CAT
[ENA]
¡û
>W1610079871
BDBY01000256
Actinomycetota
Nocardia pseudovaccinii NBRC 100343 [BDBY]
5901
5976
+
Met
CAT
[ENA]
¡û
>W1610079917
BDBZ01000024
Actinomycetota
Nocardia speluncae NBRC 108251 [BDBZ]
65993
66068
+
Met
CAT
[ENA]
¡û
>W1610079979
BDCA01000020
Actinomycetota
Nocardia vermiculata NBRC 100427 [BDCA]
140185
140258
+
Met
CAT
[ENA]
¡û
>W1610080072
BDCC01000041
Actinomycetota
Nocardia vaccinii NBRC 15922 [BDCC]
5426
5501
+
Met
CAT
[ENA]
¡û
>W1610080116
BDCD01000019
Actinomycetota
Nocardia yamanashiensis NBRC 100130 [BDCD]
104262
104189
-
Met
CAT
[ENA]
¡û
>W1610080223
BDCF01000001
Actinomycetota
Nocardia xishanensis NBRC 101358 [BDCF]
468377
468302
-
Met
CAT
[ENA]
¡û
>W1610080372
BDCH01000025
Actinomycetota
Nocardia crassostreae [BDCH]
158209
158133
-
Met
CAT
[ENA]
¡û
>W1610080419
BDCI01000036
Actinomycetota
Nocardia vulneris [BDCI]
245733
245808
+
Met
CAT
[ENA]
¡û
>W1610080492
BDCK01000011
Actinomycetota
Nocardia niwae NBRC 108934 = DSM 45340 [BDCK]
20754
20679
-
Met
CAT
[ENA]
¡û
>W1610080629
BDCM01000024
Actinomycetota
Nocardia mikamii NBRC 108933 [BDCM]
75636
75711
+
Met
CAT
[ENA]
¡û
>W1610080655
BDCN01000029
Actinomycetota
Nocardia violaceofusca NBRC 14427 [BDCN]
37011
37086
+
Met
CAT
[ENA]
¡û
>W1610080867
BDCT01000045
Actinomycetota
Nocardia arizonensis [BDCT]
89931
90006
+
Met
CAT
[ENA]
¡û
>W121055508
AIHV01000003
Actinomycetota
Nocardia brasiliensis ATCC 700358 [AIHV]
764724
764799
+
Met
CAT
[ENA]
¡û
>W121124857
BAFO01000031
Actinomycetota
Nocardia asteroides NBRC 15531 [BAFO]
362579
362504
-
Met
CAT
[ENA]
¡û
>W121124906
BAFP01000137
Actinomycetota
Nocardia abscessus NBRC 100374 [BAFP]
8993
8918
-
Met
CAT
[ENA]
¡û
>W121124953
BAFQ01000185
Actinomycetota
Nocardia aobensis NBRC 100429 [BAFQ]
17342
17267
-
Met
CAT
[ENA]
¡û
>W121125001
BAFR01000203
Actinomycetota
Nocardia araoensis NBRC 100135 [BAFR]
40657
40582
-
Met
CAT
[ENA]
¡û
>W121125051
BAFS01000271
Actinomycetota
Nocardia asiatica NBRC 100129 [BAFS]
7724
7649
-
Met
CAT
[ENA]
¡û
>W121125095
BAFT01000084
Actinomycetota
Nocardia brasiliensis NBRC 14402 [BAFT]
68373
68298
-
Met
CAT
[ENA]
¡û
>W121125197
BAFV01000067
Actinomycetota
Nocardia carnea NBRC 14403 [BAFV]
22764
22689
-
Met
CAT
[ENA]
¡û
>W121125236
BAFW01000239
Actinomycetota
Nocardia cerradoensis NBRC 101014 [BAFW]
49498
49423
-
Met
CAT
[ENA]
¡û
>W121125299
BAFX01000136
Actinomycetota
Nocardia concava NBRC 100430 [BAFX]
14792
14719
-
Met
CAT
[ENA]
¡û
>W121125359
BAFY01000220
Actinomycetota
Nocardia cyriacigeorgica NBRC 100375 [BAFY]
26653
26578
-
Met
CAT
[ENA]
¡û
>W121125406
BAFZ01000116
Actinomycetota
Nocardia exalbida NBRC 100660 [BAFZ]
20782
20707
-
Met
CAT
[ENA]
¡û
>W121125498
BAGB01000068
Actinomycetota
Nocardia jiangxiensis NBRC 101359 [BAGB]
21505
21430
-
Met
CAT
[ENA]
¡û
>W121125560
BAGC01000061
Actinomycetota
Nocardia niigatensis NBRC 100131 [BAGC]
6419
6346
-
Met
CAT
[ENA]
¡û
>W121125724
BAGF01000079
Actinomycetota
Nocardia pneumoniae NBRC 100136 [BAGF]
22458
22383
-
Met
CAT
[ENA]
¡û
>W121125776
BAGG01000115
Actinomycetota
Nocardia takedensis NBRC 100417 [BAGG]
6977
6902
-
Met
CAT
[ENA]
¡û
>W121125825
BAGH01000376
Actinomycetota
Nocardia tenerifensis NBRC 101015 [BAGH]
18793
18718
-
Met
CAT
[ENA]
¡û
>W121125990
BAGK01000217
Actinomycetota
Nocardia thailandica NBRC 100428 [BAGK]
106266
106191
-
Met
CAT
[ENA]
¡û
>W121126033
BAGL01000081
Actinomycetota
Nocardia transvalensis NBRC 15921 [BAGL]
68199
68124
-
Met
CAT
[ENA]
¡û
>W121126140
BAGN01000215
Actinomycetota
Nocardia vinacea NBRC 16497 [BAGN]
73046
72971
-
Met
CAT
[ENA]
¡û
>C131008853
CP003876
Actinomycetota
Nocardia brasiliensis ATCC 700358 HUJEG-1 [CP003876]
8659423
8659348
-
Met
CAT
[Ensembl]
¡û
>W1610617952
LGYZ01000116
Actinomycetota
Nocardia arizonensis [LGYZ]
89979
90054
+
Met
CAT
[ENA]
¡û
>W1610741253
LMRI01000002
Actinomycetota
Rhodococcus sp. Leaf7 [LMRI]
606133
606060
-
Met
CAT
[ENA]
¡û
>W1610741577
LMRN01000009
Actinomycetota
Rhodococcus sp. Leaf225 [LMRN]
665533
665606
+
Met
CAT
[ENA]
¡û
>W1610741687
LMRP01000002
Actinomycetota
Rhodococcus sp. Leaf247 [LMRP]
606033
605960
-
Met
CAT
[ENA]
¡û
>W1610741709
LMRQ01000001
Actinomycetota
Rhodococcus sp. Leaf258 [LMRQ]
665694
665767
+
Met
CAT
[ENA]
¡û
>W1610849494
LPZL01000016
Actinomycetota
Rhodococcus corynebacterioides [LPZL]
118795
118868
+
Met
CAT
[ENA]
¡û
>W1610849636
LPZO01000008
Actinomycetota
Rhodococcus kroppenstedtii [LPZO]
17576
17503
-
Met
CAT
[ENA]
¡û
>W1610891517
LRRM01000004
Actinomycetota
Nocardia brasiliensis [LRRM]
22577
22502
-
Met
CAT
[ENA]
¡û
>W1710071735
BCWV01000003
Actinomycetota
Rhodococcus corynebacterioides NBRC 14404 [BCWV]
414314
414241
-
Met
CAT
[ENA]
¡û
>W1710076884
BDAU01000048
Actinomycetota
Nocardia amikacinitolerans NBRC 108937 [BDAU]
28124
28199
+
Met
CAT
[ENA]
¡û
>W1710077060
BDAY01000009
Actinomycetota
Nocardia altamirensis NBRC 108246 [BDAY]
66598
66523
-
Met
CAT
[ENA]
¡û
>W1710077116
BDAZ01000012
Actinomycetota
Nocardia anaemiae NBRC 100462 [BDAZ]
104672
104747
+
Met
CAT
[ENA]
¡û
>W1710077172
BDBA01000050
Actinomycetota
Nocardia amamiensis NBRC 102102 [BDBA]
47783
47858
+
Met
CAT
[ENA]
¡û
>W1710077235
BDBB01000024
Actinomycetota
Nocardia arthritidis NBRC 100137 [BDBB]
19138
19063
-
Met
CAT
[ENA]
¡û
>W1710077302
BDBC01000070
Actinomycetota
Nocardia beijingensis NBRC 16342 [BDBC]
40991
41066
+
Met
CAT
[ENA]
¡û
>W1710077338
BDBD01000019
Actinomycetota
Nocardia coubleae NBRC 108252 [BDBD]
306327
306252
-
Met
CAT
[ENA]
¡û
>W1710077370
BDBE01000020
Actinomycetota
Nocardia caishijiensis NBRC 108228 [BDBE]
11489
11564
+
Met
CAT
[ENA]
¡û
>W1710077531
BDBH01000006
Actinomycetota
Nocardia harenae NBRC 108248 [BDBH]
7927
7852
-
Met
CAT
[ENA]
¡û
>W1710077556
BDBI01000002
Actinomycetota
Nocardia ignorata NBRC 108230 [BDBI]
259636
259711
+
Met
CAT
[ENA]
¡û
>W1710077677
BDBK01000002
Actinomycetota
Nocardia inohanensis NBRC 100128 [BDBK]
185533
185606
+
Met
CAT
[ENA]
¡û
>W1710077762
BDBL01000038
Actinomycetota
Nocardia kruczakiae NBRC 101016 [BDBL]
18641
18566
-
Met
CAT
[ENA]
¡û
>W1710077781
BDBM01000004
Actinomycetota
Nocardia gamkensis NBRC 108242 [BDBM]
320341
320416
+
Met
CAT
[ENA]
¡û
>W1710077940
BDBP01000031
Actinomycetota
Nocardia lijiangensis NBRC 108240 [BDBP]
84258
84183
-
Met
CAT
[ENA]
¡û
>W1710078008
BDBQ01000065
Actinomycetota
Nocardia miyunensis NBRC 108239 [BDBQ]
21510
21435
-
Met
CAT
[ENA]
¡û
>W1710078308
BDBW01000022
Actinomycetota
Nocardia puris NBRC 108233 [BDBW]
189943
190018
+
Met
CAT
[ENA]
¡û
>W1710078430
BDBY01000256
Actinomycetota
Nocardia pseudovaccinii NBRC 100343 [BDBY]
5901
5976
+
Met
CAT
[ENA]
¡û
>W1710078476
BDBZ01000024
Actinomycetota
Nocardia speluncae NBRC 108251 [BDBZ]
65993
66068
+
Met
CAT
[ENA]
¡û
>W1710078538
BDCA01000020
Actinomycetota
Nocardia vermiculata NBRC 100427 [BDCA]
140185
140258
+
Met
CAT
[ENA]
¡û
>W1710078631
BDCC01000041
Actinomycetota
Nocardia vaccinii NBRC 15922 [BDCC]
5426
5501
+
Met
CAT
[ENA]
¡û
>W1710078675
BDCD01000019
Actinomycetota
Nocardia yamanashiensis NBRC 100130 [BDCD]
104262
104189
-
Met
CAT
[ENA]
¡û
>W1710078782
BDCF01000001
Actinomycetota
Nocardia xishanensis NBRC 101358 [BDCF]
468377
468302
-
Met
CAT
[ENA]
¡û
>W1710078931
BDCH01000025
Actinomycetota
Nocardia crassostreae [BDCH]
158209
158133
-
Met
CAT
[ENA]
¡û
>W1710078978
BDCI01000036
Actinomycetota
Nocardia vulneris [BDCI]
245733
245808
+
Met
CAT
[ENA]
¡û
>W1710079051
BDCK01000011
Actinomycetota
Nocardia niwae NBRC 108934 = DSM 45340 [BDCK]
20754
20679
-
Met
CAT
[ENA]
¡û
>W1710079188
BDCM01000024
Actinomycetota
Nocardia mikamii NBRC 108933 [BDCM]
75636
75711
+
Met
CAT
[ENA]
¡û
>W1710079214
BDCN01000029
Actinomycetota
Nocardia violaceofusca NBRC 14427 [BDCN]
37011
37086
+
Met
CAT
[ENA]
¡û
>W1710079426
BDCT01000045
Actinomycetota
Nocardia arizonensis [BDCT]
89931
90006
+
Met
CAT
[ENA]
¡û
>W1710555511
FOJN01000007
Actinomycetota
Rhodococcus kroppenstedtii [FOJN]
51970
52043
+
Met
CAT
[ENA]
¡û
>W1710568845
FOTX01000001
Actinomycetota
Nocardia asteroides [FOTX]
1102203
1102278
+
Met
CAT
[ENA]
¡û
>W1710744127
LGYZ01000116
Actinomycetota
Nocardia arizonensis [LGYZ]
89979
90054
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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