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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.453999 (5 seq.)
>W131229772
AUHA01000004
Bacteroidota
Daejeonella oryzae DSM 19973 [AUHA]
28929
29003
+
Arg
ACG
[ENA]
¡û
>W2010459087
JAAFZB010000090
Bacteroidota
Flavihumibacter sp. R14 [JAAFZB]
63705
63779
+
Arg
ACG
[ENA]
¡û
>W2012457867
WVHS01000004
Bacteroidota
Pedobacter sp. HMF7056 [WVHS]
366559
366483
-
Arg
ACG
[ENA]
¡û
>W1710522562
FNHH01000002
Bacteroidota
Daejeonella rubra ruber [FNHH]
65851
65925
+
Arg
ACG
[ENA]
¡û
>W1710602993
FUYR01000005
Bacteroidota
Daejeonella lutea luteus [FUYR]
155455
155381
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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