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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454054 (4 seq.)
>WENV181411567
OGCI01031913
[OGCI] hot springs metagenome; Hot spring water
255
331
+
Arg
GCG
[ENA]
¡û
>W141279052
JAGA01000002
Chloroflexota
Kallotenue papyrolyticum JKG1 [JAGA]
1580195
1580119
-
Arg
GCG
[ENA]
¡û
>W2011505940
RYFE02000009
Chloroflexota
Chloroflexales bacterium ZM16-3 [RYFE]
1750
1826
+
Arg
GCG
[ENA]
¡û
>W2012049587
VIYF01000038
Chloroflexota
Kallotenue sp. CFH 73958 [VIYF]
7656
7732
+
Arg
GCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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